use . instead of source which is not available in all shells #601
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| name: cime testing | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| pre-commit: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 2 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Set up python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| # Offical action is deprecated in favor of pre-commit.ci | |
| # Should evaulate switching or just running manually. | |
| # - name: Runs pre-commit action | |
| # # Do not run if using act tooling (https://github.com/nektos/act) | |
| # if: ${{ !env.ACT }} | |
| # uses: pre-commit/action@v2.0.3 | |
| - name: Runs pre-commit | |
| run: | | |
| pip install pre-commit | |
| pre-commit run -a | |
| # Check if there has been a change to any file under docker/ | |
| check-dockerfile-changed: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| all_changed_and_modified_files: ${{ steps.get-changed-files.outputs.all_changed_and_modified_files }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 2 | |
| - name: Get changed files | |
| id: get-changed-files | |
| uses: tj-actions/changed-files@v17.2 | |
| with: | |
| files: docker/* | |
| # Only build container if there has been a change. | |
| # Only upload container when merging into master and there has been a change. | |
| build-containers: | |
| runs-on: ubuntu-latest | |
| needs: check-dockerfile-changed | |
| if: ${{ needs.check-dockerfile-changed.outputs.all_changed_and_modified_files != '' }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v3 | |
| with: | |
| images: jasonb87/cime | |
| tags: | | |
| type=raw,value=latest | |
| type=sha,prefix={{ date 'YYYYMMDD' }}_,format=short | |
| - name: Login to DockerHub | |
| if: github.event_name != 'pull_request' | |
| uses: docker/login-action@v1 | |
| with: | |
| username: ${{ secrets.DOCKER_HUB_USER }} | |
| password: ${{ secrets.DOCKER_HUB_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v2 | |
| with: | |
| target: base | |
| context: docker/ | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| # Runs unit testing under different python versions. | |
| unit-testing: | |
| runs-on: ubuntu-latest | |
| needs: build-containers | |
| if: ${{ always() }} | |
| container: jasonb87/cime:latest | |
| strategy: | |
| matrix: | |
| python-version: [3.7, 3.8, 3.9] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Run tests | |
| shell: bash | |
| env: | |
| INIT: "false" | |
| CIME_MODEL: "cesm" | |
| CIME_DRIVER: "mct" | |
| UPDATE_CIME: "true" | |
| GIT_SHALLOW: "true" | |
| CIME_TEST_PLATFORM: ubuntu-latest | |
| run: | | |
| export INSTALL_PATH="${PWD}" | |
| export CIME_REPO=https://github.com/${{ github.event.pull_request.head.repo.full_name || github.repository }} | |
| export CIME_BRANCH=${GITHUB_HEAD_REF:-${GITHUB_REF##*/}} | |
| mamba install -y python=${{ matrix.python-version }} | |
| source /entrypoint.sh | |
| init_cime | |
| pytest -vvv --machine docker --no-fortran-run CIME/tests/test_unit* | |
| # Run system tests | |
| system-testing: | |
| runs-on: ubuntu-latest | |
| needs: build-containers | |
| if: ${{ always() }} | |
| container: jasonb87/cime:latest | |
| strategy: | |
| matrix: | |
| model: ["e3sm", "cesm"] | |
| driver: ["mct", "nuopc"] | |
| exclude: | |
| # exclude nuopc driver when running e3sm tests | |
| - model: "e3sm" | |
| driver: "nuopc" | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Cache inputdata | |
| if: ${{ ! env.ACT }} | |
| uses: actions/cache@v2 | |
| with: | |
| path: /storage/inputdata | |
| key: inputdata-2 | |
| - name: Run tests | |
| shell: bash | |
| env: | |
| INIT: "false" | |
| CIME_MODEL: ${{ matrix.model }} | |
| CIME_DRIVER: ${{ matrix.driver }} | |
| UPDATE_CIME: "true" | |
| GIT_SHALLOW: "true" | |
| CIME_TEST_PLATFORM: ubuntu-latest | |
| run: | | |
| export INSTALL_PATH="${PWD}/cime" | |
| export CIME_REPO=https://github.com/${{ github.event.pull_request.head.repo.full_name || github.repository }} | |
| export CIME_BRANCH=${GITHUB_HEAD_REF:-${GITHUB_REF##*/}} | |
| source /entrypoint.sh | |
| if [[ "${CIME_MODEL}" == "e3sm" ]] | |
| then | |
| init_e3sm | |
| else | |
| init_cime | |
| fi | |
| source /opt/conda/etc/profile.d/conda.sh | |
| conda activate base | |
| pytest -vvv --machine docker --no-fortran-run CIME/tests/test_sys* |