fix(cli): Fix packaging issues with running CLI.

Ecogenomics · Dec 12, 2023 · 44651c7 · 44651c7
1 parent c537ebb
commit 44651c7
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Showing 2 changed files with 6 additions and 4 deletions.
diff --git a/gtdb_precurate/__main__.py b/gtdb_precurate/__main__.py
@@ -1,7 +1,6 @@
 import sys
-from pathlib import Path
-
 import typer
+from pathlib import Path
 
 from gtdb_precurate import __version__
 from gtdb_precurate.method.create_denovo import create_denovo_clusters
@@ -11,7 +10,10 @@
 from gtdb_precurate.model.tree import Tree
 from gtdb_precurate.util.logger import init_logger
 
+app = typer.Typer()
+
 
+@app.command()
 def main(
         metadata: Path,
         red_dict: Path,
@@ -67,4 +69,4 @@ def main(
 
 
 if __name__ == '__main__':
-    typer.run(main)
+    app()
diff --git a/setup.py b/setup.py
@@ -43,7 +43,7 @@ def readme():
     description=meta['description'],
     entry_points={
         'console_scripts': [
-            'gtdb_precurate = gtdb_precurate.__main__:main'
+            'gtdb_precurate = gtdb_precurate.__main__:app'
         ]
     },
     install_requires=["dendropy>=4.1.0", "typer[all]"],