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1. scripts scripts Public

   A collection of scritpts used primarily for the analysis of pantoea genomes

   Python

2. Plasmid_reconstructor Plasmid_reconstructor Public

   A program to reconstruct plasmids using homology to plasmid clusters.

   Python

3. Fun_pipeline Fun_pipeline Public

   Automated pipeline for annotating fungi genomes built with funannotate

   Python

4. Circos_chord_maker Circos_chord_maker Public

   Creates a Circos diagram using pyCircos by blasting all fasta files in a directory.

   Python

5. make_mcl_clusters make_mcl_clusters Public

   Cluster proteins, and calculate representative sequences

   Python

6. FeatureMapper FeatureMapper Public

   Python