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Add celsius as unit #68

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merged 3 commits into from
Jun 26, 2024
Merged

Add celsius as unit #68

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bf0ff6d
replaced content with newly generated model
haeussma Jun 26, 2024
cf1618c
replaced mode, added celsius as unit
haeussma Jun 26, 2024
b2bb4f1
remove unused import
JR-1991 Jun 26, 2024
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38 changes: 20 additions & 18 deletions pyenzyme/model.py
View file
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Original file line number Diff line number Diff line change
@@ -1,11 +1,13 @@
## This is a generated file. Do not modify it manually!

from __future__ import annotations
from pydantic import BaseModel, Field, ConfigDict
from typing import Optional, Generic, TypeVar

from enum import Enum
from typing import Generic, Optional, TypeVar
from uuid import uuid4

from pydantic import BaseModel, ConfigDict, Field

# Filter Wrapper definition used to filter a list of objects
# based on their attributes
Cls = TypeVar("Cls")
Expand Down Expand Up @@ -104,8 +106,8 @@ class EnzymeMLDocument(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"name": "schema:title",
"references": {
"@id": "schema:citation",
Expand Down Expand Up @@ -540,8 +542,8 @@ class Creator(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"given_name": "schema:givenName",
"family_name": "schema:familyName",
"mail": "schema:email",
Expand Down Expand Up @@ -638,8 +640,8 @@ class Vessel(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"id": {
"@id": "schema:identifier",
"@type": "@id",
Expand Down Expand Up @@ -743,8 +745,8 @@ class Protein(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"id": {
"@type": "@id",
},
Expand Down Expand Up @@ -854,8 +856,8 @@ class Complex(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"id": {
"@id": "schema:identifier",
"@type": "@id",
Expand Down Expand Up @@ -960,8 +962,8 @@ class SmallMolecule(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"id": {
"@id": "schema:identifier",
"@type": "@id",
Expand Down Expand Up @@ -1071,8 +1073,8 @@ class Reaction(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"id": {
"@id": "schema:identifier",
"@type": "@id",
Expand Down Expand Up @@ -1199,8 +1201,8 @@ class ReactionElement(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"species_id": {
"@type": "@id",
},
Expand Down Expand Up @@ -1300,8 +1302,8 @@ class Equation(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"species_id": {
"@type": "@id",
},
Expand Down Expand Up @@ -1461,8 +1463,8 @@ class Parameter(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"id": {
"@id": "schema:identifier",
"@type": "@id",
Expand Down Expand Up @@ -1564,8 +1566,8 @@ class Measurement(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"id": {
"@id": "schema:identifier",
"@type": "@id",
Expand Down Expand Up @@ -1713,8 +1715,8 @@ class MeasurementData(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"species_id": {
"@type": "@id",
},
Expand Down Expand Up @@ -1811,8 +1813,8 @@ class UnitDefinition(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
},
)

Expand Down Expand Up @@ -1941,8 +1943,8 @@ class BaseUnit(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
},
)

Expand Down Expand Up @@ -2036,8 +2038,8 @@ class EqVariable(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"id": {
"@type": "@id",
},
Expand Down Expand Up @@ -2135,8 +2137,8 @@ class EqParameter(BaseModel):
serialization_alias="@context",
default_factory=lambda: {
"enzml": "http://www.enzymeml.org/v2/",
"OBO": "http://purl.obolibrary.org/obo/",
"schema": "https://schema.org/",
"OBO": "http://purl.obolibrary.org/obo/",
"id": {
"@type": "@id",
},
Expand Down
1 change: 1 addition & 0 deletions pyenzyme/units/predefined.py
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Original file line number Diff line number Diff line change
Expand Up @@ -144,6 +144,7 @@ def dimensionless():
kelvin = UnitDefinition(base_units=[Unit.kelvin()])._get_name()
K = UnitDefinition(base_units=[Unit.kelvin()])._get_name()
celsius = UnitDefinition(base_units=[Unit.celsius()])._get_name()
C = UnitDefinition(base_units=[Unit.celsius()])._get_name()

## Ontology

Expand Down
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