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Merge pull request IQSS#9600 from IQSS/9480-h5web
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add H5Web to guides
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kcondon authored Jun 22, 2023
2 parents 94c9a9f + 234ca65 commit 3efa917
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1 change: 1 addition & 0 deletions doc/release-notes/9480-h5web.md
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A file previewer called H5Web is now available for exploring and visualizing NetCDF and HDF5 files.
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Data Explorer explore file A GUI which lists the variables in a tabular data file allowing searching, charting and cross tabulation analysis. See the README.md file at https://github.com/scholarsportal/dataverse-data-explorer-v2 for the instructions on adding Data Explorer to your Dataverse.
Whole Tale explore dataset A platform for the creation of reproducible research packages that allows users to launch containerized interactive analysis environments based on popular tools such as Jupyter and RStudio. Using this integration, Dataverse users can launch Jupyter and RStudio environments to analyze published datasets. For more information, see the `Whole Tale User Guide <https://wholetale.readthedocs.io/en/stable/users_guide/integration.html>`_.
Binder explore dataset Binder allows you to spin up custom computing environments in the cloud (including Jupyter notebooks) with the files from your dataset. `Installation instructions <https://github.com/data-exp-lab/girder_ythub/issues/10>`_ are in the Data Exploration Lab girder_ythub project. See also :ref:`binder`.
File Previewers explore file A set of tools that display the content of files - including audio, html, `Hypothes.is <https://hypothes.is/>`_ annotations, images, PDF, text, video, tabular data, spreadsheets, GeoJSON, zip, and NcML files - allowing them to be viewed without downloading the file. The previewers can be run directly from github.io, so the only required step is using the Dataverse API to register the ones you want to use. Documentation, including how to optionally brand the previewers, and an invitation to contribute through github are in the README.md file. Initial development was led by the Qualitative Data Repository and the spreasdheet previewer was added by the Social Sciences and Humanities Open Cloud (SSHOC) project. https://github.com/gdcc/dataverse-previewers
File Previewers explore file A set of tools that display the content of files - including audio, html, `Hypothes.is <https://hypothes.is/>`_ annotations, images, PDF, text, video, tabular data, spreadsheets, GeoJSON, zip, HDF5, NetCDF, and NcML files - allowing them to be viewed without downloading the file. The previewers can be run directly from github.io, so the only required step is using the Dataverse API to register the ones you want to use. Documentation, including how to optionally brand the previewers, and an invitation to contribute through github are in the README.md file. Initial development was led by the Qualitative Data Repository and the spreasdheet previewer was added by the Social Sciences and Humanities Open Cloud (SSHOC) project. https://github.com/gdcc/dataverse-previewers
Data Curation Tool configure file A GUI for curating data by adding labels, groups, weights and other details to assist with informed reuse. See the README.md file at https://github.com/scholarsportal/Dataverse-Data-Curation-Tool for the installation instructions.
13 changes: 12 additions & 1 deletion doc/sphinx-guides/source/user/dataset-management.rst
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- Zip (preview and extract/download)
- HTML
- GeoJSON
- NetCDF/HDF5 (NcML format)
- NetCDF/HDF5
- Hypothes.is

Additional file types will be added to the `dataverse-previewers <https://github.com/gdcc/dataverse-previewers>`_ repo before they are listed above so please check there for the latest information or to request (or contribute!) an additional file previewer.
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NetCDF and HDF5
---------------

H5Web Previewer
~~~~~~~~~~~~~~~

NetCDF and HDF5 files can be explored and visualized with H5Web_, which has been adapted into a file previewer tool (see :ref:`file-previews`) that can be enabled in your Dataverse installation.

.. _H5Web: https://h5web.panosc.eu

|h5web|

NcML
~~~~

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:class: img-responsive
.. |bagit-image1| image:: ./img/bagit-handler-errors.png
:class: img-responsive
.. |h5web| image:: ./img/h5web.png
:class: img-responsive

.. _Make Data Count: https://makedatacount.org
.. _Crossref: https://crossref.org
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