test admixture with coverage

.github/workflows/R-CMD-check.yaml

@@ -54,15 +54,8 @@ jobs:
              wget https://dalexander.github.io/admixture/binaries/admixture_linux-1.3.0.tar.gz
              tar -xvzf admixture_linux-1.3.0.tar.gz
              cd ..
-             #mkdir -p /home/runner/.local/bin
-             #cp "$PWD/admixture/dist/admixture_linux-1.3.0/admixture" "/usr/local/bin/admixture"
              echo "$PWD/admixture/dist/admixture_linux-1.3.0" >> "$GITHUB_PATH"
 
-      - name: Test ADMIXTURE for linux
-        if: matrix.config.os == 'ubuntu-latest'
-        run: |
-             echo "$PATH"
-             admixture --help
 
       - uses: r-lib/actions/check-r-package@v2
         with:

.github/workflows/test-coverage.yaml

@@ -29,6 +29,16 @@ jobs:
           extra-packages: any::covr, any::xml2
           needs: coverage
 
+      - name: Get ADMIXTURE for linux
+        run: |
+             mkdir admixture
+             cd admixture
+             wget https://dalexander.github.io/admixture/binaries/admixture_linux-1.3.0.tar.gz
+             tar -xvzf admixture_linux-1.3.0.tar.gz
+             cd ..
+             echo "$PWD/admixture/dist/admixture_linux-1.3.0" >> "$GITHUB_PATH"
+
+
       - name: Test coverage
         run: |
           cov <- covr::package_coverage(

_pkgdown.yml

@@ -13,6 +13,8 @@ reference:
         - gt_save
         - gt_load
         - gt_get_file_names
+        - gt_order_loci
+        - gt_update_backingfile
   - title: "Show"
     desc: "Functions to view loci and genotype information stored in a `gen_tibble`."
     contents:
@@ -22,6 +24,7 @@ reference:
         - show_ploidy
         - count_loci
         - augment_loci
+        - is_loci_table_ordered
   - title: "Selecting loci"
     desc: "Functions to select loci from a `gen_tibble`, either based on loci information, or genotype information."
     contents: