Code

Vcf windows#61

Code

Merged

dramanica merged 37 commits intomainEvolEcolGroup/tidypopgen:mainfrom vcf_windowsEvolEcolGroup/tidypopgen:vcf_windowsCopy head branch name to clipboardDec 2, 2024

+294-762

Commits

Commits on Oct 18, 2024

• check vcf parser

  dramanica

  committed
  9288a3e

Commits on Oct 19, 2024

• Merge branch 'main' into vcf_windows

  dramanica

  committed
  34019d9

• test vcf on windows

  dramanica

  committed
  80f8c63

• load all

  dramanica

  committed
  24004ef

• devtools

  dramanica

  committed
  8732195

• fix tests

  dramanica

  committed
  cb11a1d

• fix signedness warnings

  dramanica

  committed
  b5774f8

• more diagnostics

  dramanica

  committed
  bfac505

• additional tests

  dramanica

  committed
  64cf3af

• print out

  dramanica

  committed
  79d9e88

• More diagnostics

  dramanica

  committed
  d55762f

• Update test_gen_tibble.R

  dramanica

  authored
  f90b587

Commits on Oct 21, 2024

• rerun diagnostics

  dramanica

  committed
  7333951

• Merge remote-tracking branch 'origin/vcf_windows' into vcf_windows

  dramanica

  committed
  ba89655

Commits on Oct 23, 2024

• trying test message using info

  eviecarter33

  committed
  1413dd8

• adding test repeats to try and catch error

  eviecarter33

  committed
  0385db2

• move failing test

  eviecarter33

  committed
  788ad76

Commits on Nov 20, 2024

• Merge branch 'main' into vcf_windows

  dramanica

  committed
  5bf64bd

• simplify messages when testing

  dramanica

  committed
  34c85fa

• new test

  dramanica

  committed
  f8b0291

Commits on Nov 21, 2024

• fix cpp parser for mixed ploidy markers

  dramanica

  committed
  3968a04

• better vcf fix for mixed ploidy

  dramanica

  committed
  91d144e

• remove old parsing for :

  dramanica

  committed
  5c3f70d

• make sure that max_ploidy is enough

  dramanica

  committed
  5fe2ac1

• clean up

  dramanica

  committed
  3e546ea

Commits on Nov 29, 2024

• vcf haploid first marker test

  eviecarter33

  committed
  c6e2f54

• catch ploidy problems in vcf

  dramanica

  committed
  95c4f43

• Update documentation for vcf parsers, spell check error message

  eviecarter33

  committed
  7e5881e

• Haplopid marker in middle of vcf test, and chr_int fix

  eviecarter33

  committed
  f6de03f

• haploid vcf updated

  eviecarter33

  committed
  8632a55

• Merge branch 'main' into vcf_windows

  dramanica

  committed
  eff9af5

• typo

  dramanica

  committed
  c107e80

• update casting to int for chromosome

  dramanica

  committed
  c5b6ef6

• temp fix to using info from bigsnpr

  dramanica

  committed
  5330b87

• fix loci_ld_clump

  dramanica

  committed
  5079cbb

Commits on Dec 1, 2024

• small doc update

  dramanica

  committed
  fe2e45e

Commits on Dec 2, 2024

• improved clumping test

  eviecarter33

  committed
  61e2661