Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Feature/dmplex interface #77

Merged
merged 149 commits into from
Sep 27, 2024
Merged

Feature/dmplex interface #77

merged 149 commits into from
Sep 27, 2024

Conversation

will-saunders-ukaea
Copy link
Contributor

No description provided.

@will-saunders-ukaea
prototype petsc dmplex interface start
10cbd10
@will-saunders-ukaea
DMPlex initial mesh hierarchy setup passing initial tests
a8b2cd1
@will-saunders-ukaea
added TODO for tests
c4726d6
@will-saunders-ukaea
prototype interface and serial/deserialisation container for MeshHier…
12d9499 
…arhyData
@will-saunders-ukaea
mesh hierarchy data transfer progress
5dee7c1
@will-saunders-ukaea
debugging mesh hierarchy data
de8a4b2
@will-saunders-ukaea
MeshHierarchyData passing get local tests
fd1a0ff
@will-saunders-ukaea
MeshHierarchyData container passing initial gather tests
9a1cd80
@will-saunders-ukaea
test case to create simple mesh and test if point exists on it
27d3712
@will-saunders-ukaea
move dmplex creation routines into helper function
6d6c096
@will-saunders-ukaea
added start of dmplex cell serialisation
6da7cfc
@will-saunders-ukaea
added std container formatting and serialisation for a dmplex cell
7964598
@will-saunders-ukaea
dmplex interface halo creation progress
4b7bcf4
@will-saunders-ukaea
implementation for computing the point indices for the halo DM
ed4cbc0
@will-saunders-ukaea
petsc interface halos: set cones
d91a0e3
@will-saunders-ukaea
write vertices for halo DM
e8fe867
@will-saunders-ukaea
include guard for petsc tests
8ffae7f
@will-saunders-ukaea
cleanup PETSCCHK macro
422a4b7
@will-saunders-ukaea
start of local mapper for DMPlex interface
4e33824
@will-saunders-ukaea
dmplex local host mapping progress
50b47de
@will-saunders-ukaea
dmplex mapping progress
a514b34
@will-saunders-ukaea
DMPlex local cell mapping initial implementation
ee817e9
@will-saunders-ukaea
prototype implementation to map particles into halo cells - need halo…
34f4778 
… cell owning ranks and original ids
@will-saunders-ukaea
dmplex determine halo cell remote local ids and owning ranks
867e3ff
@will-saunders-ukaea
dmplex: parameterise mh creation test to work in 2 and 3 dimensions
c3136e3
@will-saunders-ukaea
test for petsc dmplex mapping
f940d76
@will-saunders-ukaea
dmplex start of advection tests for mapping
4eced34
@will-saunders-ukaea
merged dev into dmplex branch
edfdb5f
@will-saunders-ukaea
updated petsc cmake to work with interface
3dd1c24
@will-saunders-ukaea
created overlay cartesian mesh type for mapping to finer cells
9205663
@will-saunders-ukaea
added interface for evaluation/projection with sub groups, added api …
8e1017b 
…docstrings
@will-saunders-ukaea
cleanup of vtk unstructured cell type
9f66808
@will-saunders-ukaea
tidy up reflection loop in demo
7d4fa11
@will-saunders-ukaea
added helper information to stdout when a particle cannot be binned i…
9805d80 
…nto a mesh hierarchy cell
@will-saunders-ukaea
fixed bug printing debug information, added more infomation
dc86be3
@will-saunders-ukaea
better debug printing for particle data
ca6882f
@will-saunders-ukaea
fixed compilation errors in tests from additions made as a submodule
4b853b2
@will-saunders-ukaea
added cmake option to enable/disable petsc discovery
484a18d
@will-saunders-ukaea
disable cmake searching for petsc until it is ready to go into main
606f747
@will-saunders-ukaea
additional tests for MeshHierarchyData and some robustness additions
ed3a174
@will-saunders-ukaea
fixed bug where send ranks were not collected in a set first
e4d611f
@will-saunders-ukaea
added some additional debug printing to cell move
a79a46e
@will-saunders-ukaea
added ParticleSubGroup::print that behaves like ParticleGroup::print
e0d1053
@will-saunders-ukaea
switched to exponential format printing for ParticleGroup/ParticleSub…
c20cbbe 
…Group
@will-saunders-ukaea
added H5Part improvements that allow the file to be closed after each…
4bc55ad 
… write call
@will-saunders-ukaea
more robust line-line intersection testing for particle-wall intersec…
459678d 
…tion
@will-saunders-ukaea
line-line intersection tolerances
756ea7f
@will-saunders-ukaea
added pow wrapper and setprecision for error message
1e7e7a8
@will-saunders-ukaea
better error message for cell move
72d73a8
@will-saunders-ukaea
Added API documentation for the DOFMapper
8e38b8f
@will-saunders-ukaea
Added some API documentation to the QuadraturePointMapper class
68dad8e
@will-saunders-ukaea
cleanup of tests and added gmsh mesh ring test mesh
e2f7074
@will-saunders-ukaea
sync commit
4c3f96a
@will-saunders-ukaea
added ProfileMap::enable/disable to more finely tune which events/reg…
bb6eae0 
…ions are recorded
@will-saunders-ukaea
removed 'tests' that were for demonstration purposes
dd44a4f
@will-saunders-ukaea
corrected api comments which were swapped
b3468ca
@will-saunders-ukaea
merged dev into branch
edb3c50
@will-saunders-ukaea
Copy link
Contributor Author

Tests pass after merging in dev.

@will-saunders-ukaea will-saunders-ukaea merged commit 9097d54 into dev Sep 27, 2024
@will-saunders-ukaea will-saunders-ukaea deleted the feature/dmplex-interface branch September 27, 2024 13:35
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
1 participant
@will-saunders-ukaea