Fixes clang-tidy warnings in .hpp files except for calculate_constraint_residual_gradient.hpp #231
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That file was skipped because it will require a more involved refactor, which will be performed as a follow on.
Also note that dylib.hpp has several warnings that have been suppressed. I don't know enough about the mechanics at play here, so it seemed smart to put off anything but trivial changes until I can learn more.