modified files outputs.tsv, cpac_pipeline.py and surf_preproc.py

CPAC/pipeline/cpac_pipeline.py

@@ -170,6 +170,10 @@
 )
 
 from CPAC.surface.surf_preproc import surface_postproc
+from CPAC.surface.surf_preproc import cal_falff
+from CPAC.surface.surf_preproc import cal_alff
+#from CPAC.surface.surf_preproc import cal_reho
+#from CPAC.surface.surf_preproc import cal_connectivity_matrix
 
 from CPAC.timeseries.timeseries_analysis import (
     timeseries_extraction_AVG,
@@ -1314,6 +1318,13 @@ def build_workflow(subject_id, sub_dict, cfg, pipeline_name=None,
     if not rpool.check_rpool('space-fsLR_den-32k_bold.dtseries'):
         pipeline_blocks += [surface_postproc]
 
+    if not rpool.check_rpool('surf-falff'):
+        pipeline_blocks += [cal_falff]
+
+    if not rpool.check_rpool('surf-alff'):
+        pipeline_blocks += [cal_alff]
+
+
     # Extractions and Derivatives
     tse_atlases, sca_atlases = gather_extraction_maps(cfg)
     cfg.timeseries_extraction['tse_atlases'] = tse_atlases

CPAC/resources/cpac_outputs.tsv

@@ -218,3 +218,5 @@ space-template_label-GM_mask	mask	template	anat	NIfTI
 space-EPItemplate_label-CSF_mask	mask	template	func	NIfTI					
 space-EPItemplate_label-WM_mask	mask	template	func	NIfTI					
 space-EPItemplate_label-GM_mask	mask	template	func	NIfTI					
+falff	surface_derived		func
+alff	surface_derived		func