💡 Update comments based on default preconfig

FCP-INDI · Nov 9, 2023 · ce2d006 · ce2d006
1 parent 94d539f
commit ce2d006
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Showing 3 changed files with 9 additions and 12 deletions.
diff --git a/CPAC/resources/configs/pipeline_config_blank.yml b/CPAC/resources/configs/pipeline_config_blank.yml
@@ -1267,13 +1267,12 @@ nuisance_corrections:
         # Erode binarized gray matter mask in millimeters
         gm_erosion_mm:
 
-    # this is a fork point
+    # this is not a fork point
     # Run nuisance regression in native or template space
-    #   - If set to [native, template], the number of outputs will be double what it would be if only one space were chosen. Nuisance regression will only be run once per fork.
     #   - If set to template, will use the brain mask configured in
     #     ``functional_preproc: func_masking: FSL_AFNI: brain_mask``
-    #   - If ``registration_workflows: functional_registration: func_registration_to_template: apply_trasnform: using: single_step_resampling_from_stc``, this must only be set to template
-    space: [native]
+    #   - If ``registration_workflows: functional_registration: func_registration_to_template: apply_trasnform: using: single_step_resampling_from_stc``, this must be set to template
+    space: native
     ingress_regressors:
       run: Off
       Regressors:

diff --git a/CPAC/resources/configs/pipeline_config_fmriprep-ingress.yml b/CPAC/resources/configs/pipeline_config_fmriprep-ingress.yml
@@ -113,13 +113,12 @@ nuisance_corrections:
         # If using erosion, using both proportion and millimeters is not recommended.
         gm_erosion_prop: 0.6
 
-    # this is a fork point
+    # this is not a fork point
     # Run nuisance regression in native or template space
-    #   - If set to [native, template], the number of outputs will be double what it would be if only one space were chosen. Nuisance regression will only be run once per fork.
     #   - If set to template, will use the brain mask configured in
     #     ``functional_preproc: func_masking: FSL_AFNI: brain_mask``
-    #   - If ``registration_workflows: functional_registration: func_registration_to_template: apply_trasnform: using: single_step_resampling_from_stc``, this must only be set to template
-    space: [template]
+    #   - If ``registration_workflows: functional_registration: func_registration_to_template: apply_trasnform: using: single_step_resampling_from_stc``, this must be set to template
+    space: template
     ingress_regressors:
       run: On
       Regressors:

diff --git a/CPAC/resources/configs/pipeline_config_fmriprep-options.yml b/CPAC/resources/configs/pipeline_config_fmriprep-options.yml
@@ -476,13 +476,12 @@ nuisance_corrections:
         # If using erosion, using both proportion and millimeters is not recommended.
         gm_erosion_prop: 0.6
 
-    # this is a fork point
+    # this is not a fork point
     # Run nuisance regression in native or template space
-    #   - If set to [native, template], the number of outputs will be double what it would be if only one space were chosen. Nuisance regression will only be run once per fork.
     #   - If set to template, will use the brain mask configured in
     #     ``functional_preproc: func_masking: FSL_AFNI: brain_mask``
-    #   - If ``registration_workflows: functional_registration: func_registration_to_template: apply_trasnform: using: single_step_resampling_from_stc``, this must only be set to template
-    space: [template]
+    #   - If ``registration_workflows: functional_registration: func_registration_to_template: apply_trasnform: using: single_step_resampling_from_stc``, this must be set to template
+    space: template
 
     # Standard Lateral Ventricles Binary Mask
     # used in CSF mask refinement for CSF signal-related regressions