Merge branch 'feature/fmriprep_ingress' of https://github.com/FCP-IND…

…I/C-PAC into feature/fmriprep_ingress
FCP-INDI · Sep 22, 2023 · fc873eb · fc873eb
2 parents 567b5d8 + 97af910
commit fc873eb
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Showing 2 changed files with 6 additions and 8 deletions.
diff --git a/CPAC/resources/configs/pipeline_config_blank.yml b/CPAC/resources/configs/pipeline_config_blank.yml
@@ -181,8 +181,9 @@ pipeline_setup:
     # Directory where CPAC should write crash logs.
     path: /outputs/crash
 
-  outdir_ingress: 
+  outdir_ingress:
     run: Off
+
   Amazon-AWS:
 
     # If setting the 'Output Directory' to an S3 bucket, insert the path to your AWS credentials file here.

diff --git a/CPAC/resources/configs/pipeline_config_fmriprep-ingress.yml b/CPAC/resources/configs/pipeline_config_fmriprep-ingress.yml
@@ -20,10 +20,10 @@ pipeline_setup:
 
       # Generate quality control pages containing preprocessing and derivative outputs.
       generate_quality_control_images: On
-  
+
   outdir_ingress:
-    run: On 
-    Template: 'MNI152NLin2009cAsym'
+    run: On
+    Template: MNI152NLin2009cAsym
 
 anatomical_preproc:
   acpc_alignment:
@@ -123,10 +123,7 @@ nuisance_corrections:
     ingress_regressors:
       run: On
       Regressors:
-        Name: 'default'
-        Columns:
-          - global_signal
-          - white_matter
+        Columns: [global_signal, white_matter]
 
     # switch to Off if nuisance regression is off and you don't want to write out the regressors
     create_regressors: Off