Manual Deployment #13
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Error: Command failed: git push heroku mihaitodor-spdi-normalization-with-seq-files:refs/heads/main --force
remote: Updated 152 paths from 73d56e7
remote: Compressing source files... done.
remote: Building source:
remote:
remote: -----> Building on the Heroku-22 stack
remote: -----> Using buildpack: heroku/python
remote: -----> Python app detected
remote: -----> Using Python version specified in runtime.txt
remote: !
remote: ! A Python security update is available! Upgrade as soon as possible to: python-3.11.7
remote: ! See: https://devcenter.heroku.com/articles/python-runtimes
remote: !
remote: -----> Requirements file has been changed, clearing cached dependencies
remote: -----> Installing python-3.11.6
remote: -----> Installing pip 23.3.2, setuptools 68.2.2 and wheel 0.42.0
remote: -----> Installing SQLite3
remote: -----> Installing requirements with pip
remote: Collecting bioutils==0.5.8 (from -r requirements.txt (line 1))
remote: Downloading bioutils-0.5.8-py3-none-any.whl.metadata (14 kB)
remote: Collecting connexion==2.14.0 (from connexion[swagger-ui]==2.14.0->-r requirements.txt (line 2))
remote: Downloading connexion-2.14.0-py2.py3-none-any.whl (95 kB)
remote: Collecting deepdiff==6.7.1 (from -r requirements.txt (line 3))
remote: Downloading deepdiff-6.7.1-py3-none-any.whl.metadata (6.1 kB)
remote: Collecting dnspython==2.2.1 (from -r requirements.txt (line 4))
remote: Downloading dnspython-2.2.1-py3-none-any.whl (269 kB)
remote: Collecting Flask==2.2.2 (from -r requirements.txt (line 5))
remote: Downloading Flask-2.2.2-py3-none-any.whl (101 kB)
remote: Collecting flask_cors==4.0.0 (from -r requirements.txt (line 6))
remote: Downloading Flask_Cors-4.0.0-py2.py3-none-any.whl.metadata (5.4 kB)
remote: Collecting gunicorn==20.1.0 (from -r requirements.txt (line 7))
remote: Downloading gunicorn-20.1.0-py3-none-any.whl (79 kB)
remote: Collecting hgvs==1.5.4 (from -r requirements.txt (line 8))
remote: Downloading hgvs-1.5.4-py2.py3-none-any.whl (107 kB)
remote: Collecting pandas==1.3.5 (from -r requirements.txt (line 9))
remote: Downloading pandas-1.3.5.tar.gz (4.7 MB)
remote: Installing build dependencies: started
remote: Installing build dependencies: finished with status 'done'
remote: Getting requirements to build wheel: started
remote: Getting requirements to build wheel: finished with status 'done'
remote: Preparing metadata (pyproject.toml): started
remote: Preparing metadata (pyproject.toml): finished with status 'done'
remote: Collecting py-ard==1.0.10 (from -r requirements.txt (line 10))
remote: Downloading py_ard-1.0.10-py2.py3-none-any.whl.metadata (16 kB)
remote: Collecting pyfastx==2.0.1 (from -r requirements.txt (line 11))
remote: Downloading pyfastx-2.0.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (30 kB)
remote: Collecting pyliftover==0.4 (from -r requirements.txt (line 12))
remote: Downloading pyliftover-0.4.tar.gz (10 kB)
remote: Preparing metadata (setup.py): started
remote: Preparing metadata (setup.py): finished with status 'done'
remote: Collecting pymongo==4.2.0 (from -r requirements.txt (line 13))
remote: Downloading pymongo-4.2.0.tar.gz (792 kB)
remote: Preparing metadata (setup.py): started
remote: Preparing metadata (setup.py): finished with status 'done'
remote: Collecting pyranges==0.0.120 (from -r requirements.txt (line 14))
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Run
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, akhileshns/heroku-deploy@v3.12.14. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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