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Manual Deployment

Manual Deployment #13

Manually triggered January 25, 2024 15:19
Status Failure
Total duration 3m 23s
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manual_deployment.yml

on: workflow_dispatch
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1 error and 2 warnings
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Error: Command failed: git push heroku mihaitodor-spdi-normalization-with-seq-files:refs/heads/main --force remote: Updated 152 paths from 73d56e7 remote: Compressing source files... done. remote: Building source: remote: remote: -----> Building on the Heroku-22 stack remote: -----> Using buildpack: heroku/python remote: -----> Python app detected remote: -----> Using Python version specified in runtime.txt remote: ! remote: ! A Python security update is available! Upgrade as soon as possible to: python-3.11.7 remote: ! See: https://devcenter.heroku.com/articles/python-runtimes remote: ! remote: -----> Requirements file has been changed, clearing cached dependencies remote: -----> Installing python-3.11.6 remote: -----> Installing pip 23.3.2, setuptools 68.2.2 and wheel 0.42.0 remote: -----> Installing SQLite3 remote: -----> Installing requirements with pip remote: Collecting bioutils==0.5.8 (from -r requirements.txt (line 1)) remote: Downloading bioutils-0.5.8-py3-none-any.whl.metadata (14 kB) remote: Collecting connexion==2.14.0 (from connexion[swagger-ui]==2.14.0->-r requirements.txt (line 2)) remote: Downloading connexion-2.14.0-py2.py3-none-any.whl (95 kB) remote: Collecting deepdiff==6.7.1 (from -r requirements.txt (line 3)) remote: Downloading deepdiff-6.7.1-py3-none-any.whl.metadata (6.1 kB) remote: Collecting dnspython==2.2.1 (from -r requirements.txt (line 4)) remote: Downloading dnspython-2.2.1-py3-none-any.whl (269 kB) remote: Collecting Flask==2.2.2 (from -r requirements.txt (line 5)) remote: Downloading Flask-2.2.2-py3-none-any.whl (101 kB) remote: Collecting flask_cors==4.0.0 (from -r requirements.txt (line 6)) remote: Downloading Flask_Cors-4.0.0-py2.py3-none-any.whl.metadata (5.4 kB) remote: Collecting gunicorn==20.1.0 (from -r requirements.txt (line 7)) remote: Downloading gunicorn-20.1.0-py3-none-any.whl (79 kB) remote: Collecting hgvs==1.5.4 (from -r requirements.txt (line 8)) remote: Downloading hgvs-1.5.4-py2.py3-none-any.whl (107 kB) remote: Collecting pandas==1.3.5 (from -r requirements.txt (line 9)) remote: Downloading pandas-1.3.5.tar.gz (4.7 MB) remote: Installing build dependencies: started remote: Installing build dependencies: finished with status 'done' remote: Getting requirements to build wheel: started remote: Getting requirements to build wheel: finished with status 'done' remote: Preparing metadata (pyproject.toml): started remote: Preparing metadata (pyproject.toml): finished with status 'done' remote: Collecting py-ard==1.0.10 (from -r requirements.txt (line 10)) remote: Downloading py_ard-1.0.10-py2.py3-none-any.whl.metadata (16 kB) remote: Collecting pyfastx==2.0.1 (from -r requirements.txt (line 11)) remote: Downloading pyfastx-2.0.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (30 kB) remote: Collecting pyliftover==0.4 (from -r requirements.txt (line 12)) remote: Downloading pyliftover-0.4.tar.gz (10 kB) remote: Preparing metadata (setup.py): started remote: Preparing metadata (setup.py): finished with status 'done' remote: Collecting pymongo==4.2.0 (from -r requirements.txt (line 13)) remote: Downloading pymongo-4.2.0.tar.gz (792 kB) remote: Preparing metadata (setup.py): started remote: Preparing metadata (setup.py): finished with status 'done' remote: Collecting pyranges==0.0.120 (from -r requirements.txt (line 14))
Run
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, akhileshns/heroku-deploy@v3.12.14. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/