Merge branch 'master' of github.com:jennydaman/ChRIS_ultron_backEnd

chrisomatic-just/chrisomatic.yml

@@ -0,0 +1,31 @@
+version: 1.2
+
+on:
+  cube_url: http://chrisdev.local:8000/api/v1/
+  chris_superuser:
+    username: chris
+    password: chris1234
+    email: dev111@babymri.org
+
+cube:
+  users:
+    - username: cube
+      password: cube1234
+      email: cube@babymri.org
+
+  compute_resource:
+    - name: host
+      url: "http://pfcon.remote:30005/api/v1/"
+      username: pfcon
+      password: pfcon1234
+      description: host Description
+      innetwork: true
+
+  plugins:
+    - name: pl-simplefsapp
+    - name: pl-dircopy
+    - name: pl-topologicalcopy
+
+    # these two are hard-coded in make.sh to be part of example pipelines
+    - dock_image: fnndsc/pl-simpledsapp
+    - dock_image: fnndsc/pl-s3retrieve

chrisomatic-just/postscript.yml

@@ -0,0 +1,55 @@
+version: 1.2
+
+on:
+  cube_url: http://chrisdev.local:8000/api/v1/
+  chris_superuser:
+    username: chris
+    password: chris1234
+    email: dev@babymri.org
+
+cube:
+  users:
+    - username: cube
+      password: cube1234
+      email: cube@babymri.org
+
+  compute_resource:
+    - name: host
+      url: "http://pfcon.remote:30005/api/v1/"
+      username: pfcon
+      password: pfcon1234
+      description: host Description
+      innetwork: true
+    - name: moc
+      url: "http://pfcon.remote:30005/api/v1/"
+      username: pfcon
+      password: pfcon1234
+      description: moc Description
+      innetwork: true
+
+  plugins:
+    - name: pl-simplefsapp
+    - name: pl-simpledsapp
+    - name: pl-s3retrieve
+    - name: pl-dircopy
+    - name: pl-topologicalcopy
+    - name: pl-s3push
+    - name: pl-pfdicom_tagExtract
+    - name: pl-pfdicom_tagsub
+    - name: pl-mpcs
+    - name: pl-fshack
+    - name: pl-fastsurfer_inference
+    - name: pl-freesurfer_pp
+    - name: pl-z2labelmap
+    - name: pl-mri10yr06mo01da_normal
+    - dock_image: fnndsc/pl-mgz2lut_report  # missing from chrisstore.co, idk why
+    - name: pl-pfdo_mgz2img
+    - dock_image: jonocameron/pl-sevstack
+    - name: pl-brainmgz
+    - name: pl-pfdorun
+    - name: pl-mgz2imageslices
+    - name: pl-multipass
+    - name: pl-heatmap
+    - name: pl-pfdo_med2img
+    - name: pl-covidnet
+    - name: pl-covidnet-pdfgeneration

docker-compose_just.yml

@@ -7,7 +7,7 @@ services:
     profiles:
       - tools
     volumes:
-      - "./chrisomatic:/etc/chrisomatic:ro"
+      - "./chrisomatic-just:/etc/chrisomatic:ro"
       - "${DOCKER_SOCK:-/var/run/docker.sock}:/var/run/docker.sock"
     working_dir: /etc/chrisomatic
     userns_mode: host