doc: setup new vignettes

vignettes/data-conversion.Rmd

@@ -0,0 +1,23 @@
+---
+title: "Data conversion"
+output: rmarkdown::html_vignette
+vignette: >
+  %\VignetteIndexEntry{Data conversion}
+  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEncoding{UTF-8}
+---
+
+```{r, include = FALSE}
+knitr::opts_chunk$set(
+  collapse = TRUE,
+  eval     = FALSE,
+  echo     = TRUE,
+  comment  = "#>"
+)
+```
+
+```{r setup}
+library(forcis)
+```
+
+Work in progress...

vignettes/data-filtering.Rmd

@@ -0,0 +1,23 @@
+---
+title: "Data filtering"
+output: rmarkdown::html_vignette
+vignette: >
+  %\VignetteIndexEntry{Data filtering}
+  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEncoding{UTF-8}
+---
+
+```{r, include = FALSE}
+knitr::opts_chunk$set(
+  collapse = TRUE,
+  eval     = FALSE,
+  echo     = TRUE,
+  comment  = "#>"
+)
+```
+
+```{r setup}
+library(forcis)
+```
+
+Work in progress...

vignettes/data-visualization.Rmd

@@ -0,0 +1,23 @@
+---
+title: "Data visualization"
+output: rmarkdown::html_vignette
+vignette: >
+  %\VignetteIndexEntry{Data visualization}
+  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEncoding{UTF-8}
+---
+
+```{r, include = FALSE}
+knitr::opts_chunk$set(
+  collapse = TRUE,
+  eval     = FALSE,
+  echo     = TRUE,
+  comment  = "#>"
+)
+```
+
+```{r setup}
+library(forcis)
+```
+
+Work in progress...

vignettes/database-versions.Rmd

@@ -0,0 +1,23 @@
+---
+title: "Database versions"
+output: rmarkdown::html_vignette
+vignette: >
+  %\VignetteIndexEntry{Database versions}
+  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEncoding{UTF-8}
+---
+
+```{r, include = FALSE}
+knitr::opts_chunk$set(
+  collapse = TRUE,
+  eval     = FALSE,
+  echo     = TRUE,
+  comment  = "#>"
+)
+```
+
+```{r setup}
+library(forcis)
+```
+
+Work in progress...

vignettes/forcis.Rmd

@@ -16,40 +16,8 @@ knitr::opts_chunk$set(
 )
 ```
 
-
-## Skeleton
-
-
-
 ```{r setup}
-# Setup ----
-library("forcis")
+library(forcis)
 ```
 
-
-
-```{r 'to-develop'}
-# Define the path to store data ----
-# path       <- here::here()
-
-# Download the latest version of FORCIS database (from Zenodo) ----
-get_forcis_db(path = path)
-
-# Import net data ----
-nets <- get_plankton_nets_data(path)
-
-# Select taxonomy ----
-nets <- select_taxonomy(nets, taxonomy = "OT")
-
-# Select columns ----
-nets <- select_columns(nets, cols = NULL)
-
-# Compute concentration ----
-nets_concentrations <- compute_concentrations(nets, aggregate = TRUE)
-
-# Compute frequencies ----
-nets_frequencies <- compute_frequencies(nets, aggregate = TRUE)
-
-# Compute abundances ----
-nets_abundances <- compute_abundances(nets, aggregate = TRUE)
-```
+Work in progress...