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@FertigLab

FertigLab

Software projects in computational biology and bioinformatics in Elana Fertig's lab in Oncology Biostatistics and Bioinformatics at JHMI

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  1. CoGAPS CoGAPS Public

    Bayesian MCMC matrix factorization algorithm

    C++ 66 17

  2. pycogaps pycogaps Public

    python API to the CoGAPS NMF package

    Python 16 6

  3. CancerInSilico CancerInSilico Public

    An R package for running cell-based models

    C++ 8 1

  4. scatterHatch scatterHatch Public

    R 7 3

  5. GeneosCollaboration GeneosCollaboration Public

    Repository for R code for single cell sequencing analysis published in Yarchoan, M., Gane, E.J., Marron, T.U. et al. Personalized neoantigen vaccine and pembrolizumab in advanced hepatocellular car…

    R 7 1

  6. SingleCellTimeCourse SingleCellTimeCourse Public

    Head and neck cancer rna velocity scripts

    Jupyter Notebook 6 2

Repositories

Showing 10 of 74 repositories
  • dominoSignal Public Forked from Elisseeff-Lab/domino

    A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity.

    FertigLab/dominoSignal’s past year of commit activity
    R 3 GPL-3.0 8 6 (1 issue needs help) 6 Updated Nov 19, 2024
  • HCCTLS Public
    FertigLab/HCCTLS’s past year of commit activity
    R 0 1 0 0 Updated Nov 15, 2024
  • CoGAPS Public

    Bayesian MCMC matrix factorization algorithm

    FertigLab/CoGAPS’s past year of commit activity
    C++ 66 BSD-3-Clause 17 23 3 Updated Nov 15, 2024
  • prgpmf Public Forked from aschein/prgpmf

    Poisson-randomized gamma Poisson matrix factorization

    FertigLab/prgpmf’s past year of commit activity
    Python 0 3 0 0 Updated Nov 2, 2024
  • Homolig Public

    Homolig is a series of tools designed to compare the physiotypic properties of TCR and BCRs. Created by Alexander Girgis, Emily Davis-Marcisak, and Theron Palmer.

    FertigLab/Homolig’s past year of commit activity
    C++ 0 AGPL-3.0 1 0 1 Updated Nov 1, 2024
  • spatial-pipeline Public
    FertigLab/spatial-pipeline’s past year of commit activity
    Nextflow 0 0 7 (2 issues need help) 0 Updated Oct 31, 2024
  • ATACCoGAPS Public
    FertigLab/ATACCoGAPS’s past year of commit activity
    R 4 1 0 0 Updated Oct 22, 2024
  • actions Public
    FertigLab/actions’s past year of commit activity
    R 0 GPL-3.0 0 1 0 Updated Aug 12, 2024
  • J1798_trial_paper Public

    scripts for the J1798 trial paper

    FertigLab/J1798_trial_paper’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jul 22, 2024
  • splicemutr Public
    FertigLab/splicemutr’s past year of commit activity
    R 3 GPL-3.0 1 0 0 Updated Jul 5, 2024
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