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Installation failed on Mac M1 chip #3

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duohongrui opened this issue Jul 28, 2022 · 0 comments
Open

Installation failed on Mac M1 chip #3

duohongrui opened this issue Jul 28, 2022 · 0 comments

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@duohongrui
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Hi, CancerInSilico is very helpful for my research. But there is a compilation problem when I try to install CancerInSilico on M1 chip.

Tests/Core/test-CellType.cpp:18:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
        REQUIRE(type0.name() == "DEFAULT");
        ^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr  )
                        ^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
        INTERNAL_CATCH_REACT( __catchResult ) \
        ^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
    if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
                                           ^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
    #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
                                                                          ^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
        #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
                                     ^
<inline asm>:1:2: note: instantiated into assembly here
        int $3
        ^
Tests/Core/test-CellType.cpp:19:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
        REQUIRE(type0.id() == 0);
        ^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr  )
                        ^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
        INTERNAL_CATCH_REACT( __catchResult ) \
        ^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
    if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
                                           ^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
    #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
                                                                          ^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
        #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
                                     ^
<inline asm>:1:2: note: instantiated into assembly here
        int $3
        ^
Tests/Core/test-CellType.cpp:20:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
        REQUIRE(type0.size() == 1.0);
        ^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr  )
                        ^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
        INTERNAL_CATCH_REACT( __catchResult ) \
        ^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
    if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
                                           ^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
    #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
                                                                          ^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
        #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
                                     ^
<inline asm>:1:2: note: instantiated into assembly here
        int $3
        ^
Tests/Core/test-CellType.cpp:21:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
        REQUIRE(type0.minCycle() == 48);
        ^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr  )
                        ^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
        INTERNAL_CATCH_REACT( __catchResult ) \
        ^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
    if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
                                           ^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
    #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
                                                                          ^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
        #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
                                     ^
<inline asm>:1:2: note: instantiated into assembly here
        int $3
        ^
Tests/Core/test-CellType.cpp:22:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
        REQUIRE(type0.cycleLength() == 48);
        ^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr  )
                        ^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
        INTERNAL_CATCH_REACT( __catchResult ) \
        ^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
    if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
                                           ^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
    #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
                                                                          ^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
        #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
                                     ^
<inline asm>:1:2: note: instantiated into assembly here
        int $3
        ^
Tests/Core/test-CellType.cpp:28:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
        REQUIRE(type1.name() == "DOUBLE_SIZE");
        ^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr  )
                        ^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
        INTERNAL_CATCH_REACT( __catchResult ) \
        ^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
    if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
                                           ^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
    #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
                                                                          ^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
        #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
                                     ^
<inline asm>:1:2: note: instantiated into assembly here
        int $3
        ^
Tests/Core/test-CellType.cpp:29:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
        REQUIRE(type1.id() == 1);
        ^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr  )
                        ^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
        INTERNAL_CATCH_REACT( __catchResult ) \
        ^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
    if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
                                           ^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
    #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
                                                                          ^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
        #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
                                     ^
<inline asm>:1:2: note: instantiated into assembly here
        int $3
        ^
Tests/Core/test-CellType.cpp:30:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
        REQUIRE(type1.size() == 2.0);
        ^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr  )
                        ^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
        INTERNAL_CATCH_REACT( __catchResult ) \
        ^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
    if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
                                           ^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
    #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
                                                                          ^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
        #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
                                     ^
<inline asm>:1:2: note: instantiated into assembly here
        int $3
        ^
Tests/Core/test-CellType.cpp:31:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
        REQUIRE(type1.minCycle() == 48);
        ^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr  )
                        ^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
        INTERNAL_CATCH_REACT( __catchResult ) \
        ^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
    if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
                                           ^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
    #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
                                                                          ^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
        #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
                                     ^
<inline asm>:1:2: note: instantiated into assembly here
        int $3
        ^
Tests/Core/test-CellType.cpp:32:9: error: unrecognized instruction mnemonic, did you mean: bit, cnt, hint, ins, not?
        REQUIRE(type1.cycleLength() == 48);
        ^
Tests/Core/../catch.h:11513:25: note: expanded from macro 'REQUIRE'
#define REQUIRE( expr ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, expr  )
                        ^
Tests/Core/../catch.h:2162:9: note: expanded from macro 'INTERNAL_CATCH_TEST'
        INTERNAL_CATCH_REACT( __catchResult ) \
        ^
Tests/Core/../catch.h:2146:44: note: expanded from macro 'INTERNAL_CATCH_REACT'
    if( resultBuilder.shouldDebugBreak() ) CATCH_BREAK_INTO_DEBUGGER(); \
                                           ^
Tests/Core/../catch.h:2082:75: note: expanded from macro 'CATCH_BREAK_INTO_DEBUGGER'
    #define CATCH_BREAK_INTO_DEBUGGER() if( Catch::isDebuggerActive() ) { CATCH_TRAP(); }
                                                                          ^
Tests/Core/../catch.h:2060:38: note: expanded from macro 'CATCH_TRAP'
        #define CATCH_TRAP() __asm__("int $3\n" : : /* NOLINT */ )
                                     ^
<inline asm>:1:2: note: instantiated into assembly here
        int $3
        ^
10 errors generated.
make: *** [Tests/Core/test-CellType.o] Error 1
ERROR: compilation failed for package ‘CancerInSilico’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/CancerInSilico’
Warning message:
In i.p(...) :
  installation of package ‘/var/folders/1l/xmc98tgx0m37wxtbtwnl6h7c0000gn/T//RtmpsRqpug/file7ca6a7ccde7/CancerInSilico_2.5.0.tar.gz’ had non-zero exit status

Could you please help me solve this problem? Thanks very much!

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