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@Functional-Genomics-Lab

Functional Genomics Laboratory

Welcome to the laboratory of Dr. Tae Hoon Kim at The University of Texas at Dallas.

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Welcome to the Functional Genomics Laboratory at The University of Texas at Dallas. We are located in the Department of Biological Sciences in the School of Natural Sciences and Mathematics. We study mechanisms of genome expression: transcription insulation, transcription elongation, enhancers, and long range chromosomal interactions.

If you are interested in pursuing your postbaccalaureate, graduate, or postdoctoral research training with us, please send a CV, letters of recommendation, and reprints of recent papers to Dr. Tae Hoon Kim for consideration. If you are an undergraduate student at UTD, please submit your research interest application via a web form available here.

Follow our laboratory's blog: lablog.

nf-core

Our lab is involved in nf-core, a community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core/nascent nf-core/viralintegration

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  1. Applied-Genomics Applied-Genomics Public archive

    JavaScript 1 9

  2. Global-transcriptional-activity Global-transcriptional-activity Public archive

    R

  3. IFN_heterogeneity IFN_heterogeneity Public

    Forked from g-bk/IFN_heterogeneity

    Code used in IFN heterogeneity paper

    R

  4. primer3-nf primer3-nf Public

    Forked from photocyte/primer3_nf

    A Nextflow workflow for primer3

    Nextflow 1

  5. active-enhancers active-enhancers Public

    Forked from Kraus-Lab/active-enhancers

    Identifying active enhancers and well known transcritption factor binding sites from GRO-seq data.

    Nextflow 1

Repositories

Showing 10 of 15 repositories
  • homer-uniqmap-nf Public

    For building HOMER uniqmaps

    Functional-Genomics-Lab/homer-uniqmap-nf’s past year of commit activity
    Nextflow 0 0 0 0 Updated Nov 21, 2024
  • dREG-nf Public
    Functional-Genomics-Lab/dREG-nf’s past year of commit activity
    Shell 0 MIT 0 1 1 Updated Oct 29, 2024
  • active-enhancers Public Forked from Kraus-Lab/active-enhancers

    Identifying active enhancers and well known transcritption factor binding sites from GRO-seq data.

    Functional-Genomics-Lab/active-enhancers’s past year of commit activity
    Nextflow 1 MIT 1 0 0 Updated Sep 9, 2024
  • IFN_heterogeneity Public Forked from g-bk/IFN_heterogeneity

    Code used in IFN heterogeneity paper

    Functional-Genomics-Lab/IFN_heterogeneity’s past year of commit activity
    R 0 MIT 1 0 1 Updated Aug 19, 2024
  • primer3-nf Public Forked from photocyte/primer3_nf

    A Nextflow workflow for primer3

    Functional-Genomics-Lab/primer3-nf’s past year of commit activity
    Nextflow 1 1 0 0 Updated Aug 7, 2024
  • .github Public
    Functional-Genomics-Lab/.github’s past year of commit activity
    0 0 0 0 Updated May 23, 2024
  • Functional-Genomics-Lab/Global-transcriptional-activity’s past year of commit activity
    R 0 0 0 0 Updated Apr 26, 2024
  • Applied-Genomics Public archive
    Functional-Genomics-Lab/Applied-Genomics’s past year of commit activity
    JavaScript 1 9 1 0 Updated Apr 8, 2024
  • dREG Public Forked from Danko-Lab/dREG

    Detecting Regulatory Elements using GRO-seq and PRO-seq

    Functional-Genomics-Lab/dREG’s past year of commit activity
    R 0 21 0 0 Updated Apr 3, 2024
  • TEMP2-nf Public Forked from weng-lab/TEMP2

    Algorithm to detect germline and de novo transposon insertions

    Functional-Genomics-Lab/TEMP2-nf’s past year of commit activity
    Shell 0 GPL-3.0 6 0 0 Updated Nov 14, 2023

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