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Wrap subplot using with statement (#822)
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Wrapping the `subplot` function, in a `with` statement!
Original GMT `subplot` function can be found at
https://docs.generic-mapping-tools.org/6.1/subplot.html.
This is the 3rd attempt at implementing `subplot` in PyGMT,
with commits heavily re-adapted/cherry-picked from
#412 and
#427.

* Add fig.subplot and fig.set_panel to API docs
* Alias fixedlabel (A), clearance (C), verbose (V) for set_panel
* Turn fig.set_panel into a context manager
* Alias projection (J), region (R), verbose (V), x/yshift (X/Y) for subplot
* Allow for spaces in title and labels without needing double quotes

Mitigates against #247.

* Allow for list inputs into fig.set_panel(panel=...)
* Rename sca to set_panel and ax to panel
* Fix bug that prevented boolean to -A from working
* Add note that subplot panel is activated until further notice
* Validate subplot nrows/ncols and figsize/subsize argument inputs
* Revise advanced subplot layout subsection to use two subplots calls

Co-authored-by: Dongdong Tian <seisman.info@gmail.com>
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weiji14 and seisman authored Feb 14, 2021
1 parent bc84891 commit a2628e6
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2 changes: 2 additions & 0 deletions doc/api/index.rst
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Expand Up @@ -36,7 +36,9 @@ Plotting data and laying out the map:
Figure.meca
Figure.plot
Figure.plot3d
Figure.set_panel
Figure.shift_origin
Figure.subplot
Figure.text

Color palette table generation:
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1 change: 1 addition & 0 deletions doc/index.rst
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Expand Up @@ -39,6 +39,7 @@
tutorials/earth-relief.rst
tutorials/3d-perspective-image.rst
tutorials/inset.rst
tutorials/subplots.rst
tutorials/configuration.rst

.. toctree::
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237 changes: 237 additions & 0 deletions examples/tutorials/subplots.py
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"""
Making subplots
===============
When you're preparing a figure for a paper, there will often be times when
you'll need to put many individual plots into one large figure, and label them
'abcd'. These individual plots are called subplots.
There are two main ways to create subplots in GMT:
- Use :meth:`pygmt.Figure.shift_origin` to manually move each individual plot
to the right position.
- Use :meth:`pygmt.Figure.subplot` to define the layout of the subplots.
The first method is easier to use and should handle simple cases involving a
couple of subplots. For more advanced subplot layouts, however, we recommend the
use of :meth:`pygmt.Figure.subplot` which offers finer grained control, and
this is what the tutorial below will cover.
"""
# sphinx_gallery_thumbnail_number = 3

import pygmt

###############################################################################
#
# Let's start by initializing a :class:`pygmt.Figure` instance.

fig = pygmt.Figure()

###############################################################################
# Define subplot layout
# ---------------------
#
# The :meth:`pygmt.Figure.subplot` function is used to set up the layout, size,
# and other attributes of the figure. It divides the whole canvas into regular
# grid areas with *n* rows and *m* columns. Each grid area can contain an
# individual subplot. For example:

###############################################################################
# .. code-block:: default
#
# with fig.subplot(nrows=2, ncols=3, figsize=("15c", "6c"), frame="lrtb"):
# ...

###############################################################################
# will define our figure to have a 2 row and 3 column grid layout.
# ``figsize=("15c", "6c")`` defines the overall size of the figure to be 15 cm
# wide by 6 cm high. Using ``frame="lrtb"`` allows us to customize the map frame
# for all subplots instead of setting them individually. The figure layout will
# look like the following:

with fig.subplot(nrows=2, ncols=3, figsize=("15c", "6c"), frame="lrtb"):
for i in range(2): # row number starting from 0
for j in range(3): # column number starting from 0
index = i * 3 + j # index number starting from 0
with fig.set_panel(panel=index): # sets the current panel
fig.text(
position="MC",
text=f"index: {index}; row: {i}, col: {j}",
region=[0, 1, 0, 1],
)
fig.show()

###############################################################################
# The :meth:`pygmt.Figure.set_panel` function activates a specified subplot, and
# all subsequent plotting functions will take place in that subplot panel. This
# is similar to matplotlib's ``plt.sca`` method. In order to specify a subplot,
# you will need to provide the identifier for that subplot via the ``panel``
# parameter. Pass in either the *index* number, or a tuple/list like
# (*row*, *col*) to ``panel``.

###############################################################################
# .. note::
#
# The row and column numbering starts from 0. So for a subplot layout with
# N rows and M columns, row numbers will go from 0 to N-1, and column
# numbers will go from 0 to M-1.

###############################################################################
# For example, to activate the subplot on the top right corner (index: 2) at
# *row*\=0 and *col*\=2, so that all subsequent plotting commands happen
# there, you can use the following command:

###############################################################################
# .. code-block:: default
#
# with fig.set_panel(panel=[0, 2]):
# ...

###############################################################################
# Making your first subplot
# -------------------------
# Next, let's use what we learned above to make a 2 row by 2 column subplot
# figure. We'll also pick up on some new parameters to configure our subplot.

fig = pygmt.Figure()
with fig.subplot(
nrows=2,
ncols=2,
figsize=("15c", "6c"),
autolabel=True,
frame=["af", "WSne"],
margins=["0.1c", "0.2c"],
title="My Subplot Heading",
):
fig.basemap(region=[0, 10, 0, 10], projection="X?", panel=[0, 0])
fig.basemap(region=[0, 20, 0, 10], projection="X?", panel=[0, 1])
fig.basemap(region=[0, 10, 0, 20], projection="X?", panel=[1, 0])
fig.basemap(region=[0, 20, 0, 20], projection="X?", panel=[1, 1])
fig.show()

###############################################################################
# In this example, we define a 2-row, 2-column (2x2) subplot layout using
# :meth:`pygmt.Figure.subplot`. The overall figure dimensions is set to be
# 15 cm wide and 6 cm high (``figsize=["15c", "6c"]``). In addition, we use
# some optional parameters to fine-tune some details of the figure creation:
#
# - ``autolabel=True``: Each subplot is automatically labelled abcd
# - ``margins=["0.1c", "0.2c"]``: adjusts the space between adjacent subplots.
# In this case, it is set as 0.1 cm in the X direction and 0.2 cm in the Y
# direction.
# - ``title="My Subplot Heading"``: adds a title on top of the whole figure.
#
# Notice that each subplot was set to use a linear projection ``"X?"``.
# Usually, we need to specify the width and height of the map frame, but it is
# also possible to use a question mark ``"?"`` to let GMT decide automatically
# on what is the most appropriate width/height for the each subplot's map
# frame.

###############################################################################
# .. tip::
#
# In the above example, we used the following commands to activate the
# four subplots explicitly one after another::
#
# fig.basemap(..., panel=[0, 0])
# fig.basemap(..., panel=[0, 1])
# fig.basemap(..., panel=[1, 0])
# fig.basemap(..., panel=[1, 1])
#
# In fact, we can just use ``fig.basemap(..., panel=True)`` without
# specifying any subplot index number, and GMT will automatically activate
# the next subplot panel.

###############################################################################
# .. note::
#
# All plotting functions (e.g. :meth:`pygmt.Figure.coast`,
# :meth:`pygmt.Figure.text`, etc) are able to use ``panel`` parameter when
# in subplot mode. Once a panel is activated using ``panel`` or
# :meth:`pygmt.Figure.set_panel`, subsequent plotting commands that don't
# set a ``panel`` will have their elements added to the same panel as
# before.

###############################################################################
# Shared X and Y axis labels
# --------------------------
# In the example above with the four subplots, the two subplots for each row
# have the same Y-axis range, and the two subplots for each column have the
# same X-axis range. You can use the ``sharex``/``sharey`` parameters to set a
# common X and/or Y axis between subplots.

fig = pygmt.Figure()
with fig.subplot(
nrows=2,
ncols=2,
figsize=("15c", "6c"), # width of 15 cm, height of 6 cm
autolabel=True,
margins=["0.3c", "0.2c"], # horizontal 0.3 cm and vertical 0.2 cm margins
title="My Subplot Heading",
sharex="b", # shared x-axis on the bottom side
sharey="l", # shared y-axis on the left side
frame="WSrt",
):
fig.basemap(region=[0, 10, 0, 10], projection="X?", panel=True)
fig.basemap(region=[0, 20, 0, 10], projection="X?", panel=True)
fig.basemap(region=[0, 10, 0, 20], projection="X?", panel=True)
fig.basemap(region=[0, 20, 0, 20], projection="X?", panel=True)
fig.show()

###############################################################################
# ``sharex="b"`` indicates that subplots in a column will share the x-axis, and
# only the **b**\ ottom axis is displayed. ``sharey="l"`` indicates that
# subplots within a row will share the y-axis, and only the **l**\ eft axis is
# displayed.
#
# Of course, instead of using the ``sharex``/``sharey`` option, you can also
# set a different ``frame`` for each subplot to control the axis properties
# individually for each subplot.

###############################################################################
# Advanced subplot layouts
# ------------------------
#
# Nested subplot are currently not supported. If you want to create more
# complex subplot layouts, some manual adjustments are needed.
#
# The following example draws three subplots in a 2-row, 2-column layout, with
# the first subplot occupying the first row.

fig = pygmt.Figure()
# Bottom row, two subplots
with fig.subplot(nrows=1, ncols=2, figsize=("15c", "3c"), autolabel="b)"):
fig.basemap(
region=[0, 5, 0, 5], projection="X?", frame=["af", "WSne"], panel=[0, 0]
)
fig.basemap(
region=[0, 5, 0, 5], projection="X?", frame=["af", "WSne"], panel=[0, 1]
)
# Move plot origin by 1 cm above the height of the entire figure
fig.shift_origin(yshift="h+1c")
# Top row, one subplot
with fig.subplot(nrows=1, ncols=1, figsize=("15c", "3c"), autolabel="a)"):
fig.basemap(
region=[0, 10, 0, 10], projection="X?", frame=["af", "WSne"], panel=[0, 0]
)
fig.text(text="TEXT", x=5, y=5)

fig.show()

###############################################################################
#
# We start by drawing the bottom two subplots, setting ``autolabel="b)"`` so
# that the subplots are labelled 'b)' and 'c)'. Next, we use
# :meth:`pygmt.Figure.shift_origin` to move the plot origin 1 cm above the
# **h**\ eight of the entire figure that is currently plotted (i.e. the bottom
# row subplots). A single subplot is then plotted on the top row. You may need
# to adjust the ``yshift`` parameter to make your plot look nice. This top row
# uses ``autolabel="a)"``, and we also plotted some text inside. Note that
# ``projection="X?"`` was used to let GMT automatically determine the size of
# the subplot according to the size of the subplot area.

###############################################################################
# You can also manually override the ``autolabel`` for each subplot using for
# example, ``fig.set_panel(..., fixedlabel="b) Panel 2")`` which would allow
# you to manually label a single subplot as you wish. This can be useful for
# adding a more descriptive subtitle to individual subplots.
2 changes: 2 additions & 0 deletions pygmt/figure.py
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Expand Up @@ -387,5 +387,7 @@ def _repr_html_(self):
meca,
plot,
plot3d,
set_panel,
subplot,
text,
)
1 change: 1 addition & 0 deletions pygmt/src/__init__.py
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Expand Up @@ -24,6 +24,7 @@
from pygmt.src.meca import meca
from pygmt.src.plot import plot
from pygmt.src.plot3d import plot3d
from pygmt.src.subplot import set_panel, subplot
from pygmt.src.surface import surface
from pygmt.src.text import text_ as text # "text" is an argument within "text_"
from pygmt.src.which import which
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