This action automates testing workflows written in Workflow Description Language (WDL) on a self-hosted Cromwell server on Azure.

Inputs

• subcommand [Optional] Specifies the task that the action should perform, and its value can be either of the following.

  • synchronous [Default]: Submits the workflow, monitors its execution status, and downloads the metadata file of the completed submission.
  • submit: Submits the workflow to Cromwell on Azure.
  • monitor: Checks the status of submission every 30 seconds, and fails or succeeds based on the submission's status.
  • metadata: Downloads the metadata file of the submission, named [UUID of the submission].json.

• azure_storage_account_name [Required] Sets the storage account name used by the Cromwell on Azure instance.

• azure_storage_container_name [Required] Sets the Azure container name under the given storage account that Cromwell on Azure instance uses.

• azure_storage_inputs_container_name [Required] Sets the Azure container name that will be used to store the files used for submitting a workflow to Cromwell on Azure.

• azure_storage_blob_name [Optional] Sets the name of the blob under the set azure_storage_account_name/azure_storage_container_name that Cromwell on Azure listens for new submissions. [Default: new]

• azure_storage_metadata_container_name [Optional] Sets the container name that contains the metadata of the completed tasks. [Default: outputs]

• workflow_path [Required] Sets the local path of the workflow to be tested.

• workflow_inputs_path [Required] Sets the local path of a file in JSON format that contains the inputs of the workflow to be tested.

• workflow_options_path [Optional] Sets the local path to a file in JSON format that contains the Cromwell options for running the workflow. [Default: null]

• workflow_dependencies_path [Required] Sets the local path to a file in .zip format that contains all the dependencies of the workflow to be tested.

• workflow_id [Optional] Sets the UUID of the workflow. This option is used when subcommand = monitor or subcommand = metadata. [Default: null]