Merge branch 'main' into 82-improve-cytoscape-graph-visualization #371
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| name: checks | ||
| on: [push, pull_request] | ||
| jobs: | ||
| test: | ||
| name: test py${{ matrix.python-version }} | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| python-version: ["3.11", "3.12", "3.13"] | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Install dependencies | ||
| run: | | ||
| python3 -m pip install ".[tests]" | ||
| - name: Run tests | ||
| run: python3 -m pytest tests/test_dgidb.py tests/test_network_constructor.py | ||
| lint: | ||
| name: lint | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Setup Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: "3.11" | ||
| - name: Install dependencies | ||
| run: python3 -m pip install ".[dev]" | ||
| - name: Check style | ||
| run: python3 -m ruff check . && python3 -m ruff format --check . | ||
| precommit_hooks: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| - cmd: "end-of-file-fixer" | ||
| - cmd: "trailing-whitespace" | ||
| - cmd: "mixed-line-ending" | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python 3.12 | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: 3.12 | ||
| - uses: pre-commit/action@v3.0.1 | ||
| with: | ||
| extra_args: ${{ matrix.cmd }} --all-files | ||
| docs: | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| SPHINX_GITHUB_CHANGELOG_TOKEN: ${{ secrets.SPHINX_GITHUB_CHANGELOG_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: 3.11 | ||
| - name: Install dependencies | ||
| run: | | ||
| python3 -m pip install --upgrade pip | ||
| python3 -m pip install '.[docs]' | ||
| - name: Attempt docs build | ||
| working-directory: ./docs | ||
| run: make html | ||
