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Updating to match core D4J#12

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Greg4cr merged 35 commits intoGreg4cr:masterGreg4cr/defects4j:masterfrom rjust:masterrjust/defects4j:masterCopy head branch name to clipboardAug 8, 2017

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Commits on May 24, 2017

• Rather than deleting a source java file straighway due to any compilation issue, 'fix_test_suite' script tries to first just remove the uncompilable test cases. In case of serious compilation issue…

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• Added test cases.

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Commits on May 27, 2017

• Merge pull request #69 from jose/fix_test_suite

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Commits on Jun 9, 2017

• Updated top-level README.

  rjust

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• Improved terminology in README; fixes issue #84.

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Commits on Jun 12, 2017

• add a link to the empirical results of University of Lille & Inria

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Commits on Jul 19, 2017

• Remove all line comments in rm_broken_tests to avoid unbalanced delimiters; fixes issue #96

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• Minor documentation improvements.

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Commits on Jul 27, 2017

• Keep track of how many test classes/cases got removed due to compilation or execution issues.

  

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• Added test cases.

  

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• Avoid using DB variables all over the place.

  

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• Make the verbose logging optional so that the fix_test_suite script does not depend on the DB module by default.

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• Added option -e <exclude_file> to mutation-analysis script.

  

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• Include the number of excluded mutants in the mutation-analysis report.

  

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• The exclude file may contain comments or empty lines, therefore lines that match the following regexes should be ignored: '\s*#.*' and '\s*$'.

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• Replaced the hard-coded file name 'exclude.txt' with a parameter.

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Commits on Jul 28, 2017

• Merge pull request #94 from jose/mutants_exclude_file

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• Simplified a test script and improved documentation.

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• Added a TODO.

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• Merge pull request #88 from monperrus/patch-1

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• Merge pull request #86 from jose/numbers_from_fix_test_suite

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• Fixed a typo and removed default value for exclude file.

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• Minor documentation improvements; explicitly open input file read-only.

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• Made major.exclude property optional since Major does ignore non-existing exclude files.

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• Simplified a test script.

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• Simplified test script.

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• Consistent order of mutation-related subroutines.

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• Tweaked the README.

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• Tweaked a test script and made it more robust.

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• Improved fix_test_suite script.

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• Fixed 'Use of uninitialized value $class::' warning.

  jose

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• Fix for failing test cases.

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• Merge pull request #101 from jose/regex_issue

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Commits on Aug 1, 2017

• Small changes to README.md

  mernst

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Commits on Aug 8, 2017

• Fix for Mockito: make sure all dependencies are listed on the classpath when exporting cp.compile; fixes issue #89.

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