Proteocompare (A protein comparison tool)

Protein One vs Protein Two

This is the hub of our project, please read everything below to properly create the environment.

To install the conda with all the required files, run this command ->

conda env create -f environment.yml

This will create the environment and import dependencies, after this you should be able to run the project

To install Engine Packages

• Ursgal has a function named download_resources (ex... uc.download_resources(["YOUR RESOURCES TO DOWNLOAD"]))
• Use this to download engines such as thermal raw parser and percolator

To use our program, it will require you to know what bacteria you are looking for, and a reference protein (fasta file)

All of your results will be outputted in the user specified output folder.

During the second run, you can add other mzml files or raw files to the specified folders for more information!