Physio Analysis

• code/physio.py contains the functions necessary to currently process the GSR data in Bike_ATrain and BikeExtend
• code/explore_physio.ipynb, is a notebook that contains the "playground" for thinking about how to organize the analysis.
• environment.yml specifies the requisite python packages necessary to run the code.
• data contains example test data for evaluating the functions.
• output contains example output from the script.

Example call

From the root directory of this repository:

./code/physio.py data output/testOut

To get help type: ./code/physio.py --help

Example Docker call:

docker run -it --rm \
       -v ${PWD}:/home/neuro/physioAnalysis \
       -v ${HOME}/.gitconfig:/home/neuro/.gitconfig \
       -v ${HOME}/.git-credentials:/home/neuro/.git-credentials \
       -p 8445:8080 \
       jdkent/physio-analys:dev