110 copying update (#564)

* close #195. (#196)

* Update HDF5PluginMacros.cmake

* Update HDF5PluginMacros.cmake

* Modify temporary rpath for testing in java example scripts. (#230)

* Fix undefined left shifting of negative numbers (#338)

Undefined Bahavior Sanitizer errored here about left shifting negative numbers.

* Update license url (#332)

* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.

* Cleans up a couple of MSVC warnings in testhdf5 (#475)
* Fixes a few testhdf5 warnings raised in Visual Studio

Visual Studio is grumpier about treating pointers like integers than
gcc.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Fix typos and grammar errors. (#476)

* Suppresses the tcheck_version test's abort dialog on Windows (#477)

* Suppresses the tcheck_version test's abort dialog on Windows

Windows raises a modal abort/retry/ignore dialog box when CRT
calls abort(). This change installs a report hook that suppresses
the dialog so that the CMake tests don't time out waiting for a
nonexistent user to click a dialog box.

* Committing clang-format changes

* Removes __cdecl from callback

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Update top-level COPYING file and remove COPYING files from
subdirectories.

* Update top-level COPYING file and remove COPYING files from subdirectories (#561)

* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING (license) file.

* Add release_docs/code-conventions.md file.

* Add script to test h5py.

* Fix script error.

* Add file h5pytest.yml.

* Test declaration of counter variables in for loops.

* Committing clang-format changes

* Committing clang-format changes

* Added [] to line 126 of H5LTanalyze.l.
Ran bin/genparser with flex v2.6.4 and Bison v3.0.4 on jelly.

* Revert "Added [] to line 126 of H5LTanalyze.l."

This reverts commit e4a9cee.

* Revert extra commits to match canonical develop.

* Update top-level COPYING file and remove COPYING files from
subdirectories.

* Remove subdirectory COPYING files from MANIFEST.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: Sean McBride <sean@rogue-research.com>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

COPYING

@@ -67,6 +67,12 @@ under Prime Contract No. DE-AC02-05CH11231.
 
 -----------------------------------------------------------------------------
 
+Portions of HDF5 were developed with support from Lawrence Livermore 
+National Laboratory and the United States Department of Energy under 
+Prime Contract No. DE-AC52-07NA27344.
+
+-----------------------------------------------------------------------------
+
 Portions of HDF5 were developed with support from the University of 
 California, Lawrence Livermore National Laboratory (UC LLNL).  
 The following statement applies to those portions of the product and must 

MANIFEST

@@ -63,7 +63,6 @@
 ./m4/ax_try_compile_java.m4
 ./m4/ax_try_run_java.m4
 
-./bin/COPYING
 ./bin/bbrelease         _DO_NOT_DISTRIBUTE_
 ./bin/buildhdf5
 ./bin/checkapi        _DO_NOT_DISTRIBUTE_
@@ -122,7 +121,6 @@
 ./bin/pkgscrpts/makeInternalREADME.pl      _DO_NOT_DISTRIBUTE_
 ./bin/pkgscrpts/makeOuterREADME.pl         _DO_NOT_DISTRIBUTE_
 
-./config/COPYING
 ./config/BlankForm
 ./config/apple
 ./config/cce-fflags
@@ -264,7 +262,6 @@
 #
 #------------------------------------------------------------------------------
 
-./fortran/COPYING
 ./fortran/Makefile.am
 ./fortran/robodoc.rc
 
@@ -394,7 +391,6 @@
 #
 #------------------------------------------------------------------------------
 
-./c++/COPYING
 ./c++/Makefile.am
 
 ./c++/examples/chunks.cpp
@@ -525,7 +521,6 @@
 #
 #------------------------------------------------------------------------------
 
-./release_docs/COPYING
 ./release_docs/HISTORY-1_0-1_8_0_rc3.txt
 ./release_docs/HISTORY-1_8.txt
 ./release_docs/HISTORY-1_10.txt
@@ -546,7 +541,6 @@
 ./src/hdf5.lnt        _DO_NOT_DISTRIBUTE_
 ./src/hdf5-win.lnt      _DO_NOT_DISTRIBUTE_
 ./src/hdf5-lin.lnt      _DO_NOT_DISTRIBUTE_
-./src/COPYING
 ./src/H5.c
 ./src/H5checksum.c
 ./src/H5dbg.c
@@ -1007,7 +1001,6 @@
 ./src/H5win32defs.h
 
 ./test/AtomicWriterReader.txt
-./test/COPYING
 ./test/H5srcdir.h
 ./test/H5srcdir_str.h.in
 ./test/Makefile.am
@@ -1369,7 +1362,6 @@
 ./test/testfiles/plist_files/strcpl_64be
 ./test/testfiles/plist_files/strcpl_64le
 
-./testpar/COPYING
 ./testpar/Makefile.am
 ./testpar/t_bigio.c
 ./testpar/t_cache.c
@@ -1400,7 +1392,6 @@
 ./testpar/testphdf5.c
 ./testpar/testphdf5.h
 
-./tools/COPYING
 ./tools/Makefile.am
 ./tools/src/Makefile.am
 ./tools/test/Makefile.am
@@ -2791,7 +2782,6 @@
 ./tools/testfiles/h5mkgrp_single_p.ls
 ./tools/testfiles/h5mkgrp_single_l.ls
 
-./tools/test/perform/COPYING
 ./tools/test/perform/Makefile.am
 ./tools/test/perform/build_h5perf_alone.sh
 ./tools/test/perform/build_h5perf_serial_alone.sh
@@ -2816,7 +2806,6 @@
 ./tools/test/perform/zip_perf.c
 
 # Utils directory
-./utils/COPYING
 ./utils/Makefile.am
 
 # Mirror VFD utilities
@@ -2828,7 +2817,6 @@
 ./utils/mirror_vfd/mirror_writer.c
 
 # high level libraries
-./hl/COPYING
 ./hl/Makefile.am
 ./hl/examples/Makefile.am
 ./hl/examples/ex_ds1.c
@@ -2855,7 +2843,6 @@
 ./hl/examples/ptExampleFL.c
 ./hl/examples/run-hl-ex.sh
 ./hl/examples/run-hlc-ex.sh.in
-./hl/src/COPYING
 ./hl/src/Makefile.am
 ./hl/src/H5DO.c
 ./hl/src/H5DOpublic.h
@@ -2884,7 +2871,6 @@
 ./hl/src/H5TBprivate.h
 ./hl/src/H5TBpublic.h
 ./hl/src/hdf5_hl.h
-./hl/test/COPYING
 ./hl/test/H5srcdir_str.h.in
 ./hl/test/Makefile.am
 ./hl/test/dsdata.txt
@@ -2920,7 +2906,6 @@
 ./hl/test/usa.wri
 
 # tools
-./hl/tools/COPYING
 ./hl/tools/Makefile.am
 ./hl/tools/gif2h5/Makefile.am
 ./hl/tools/gif2h5/decompress.c
@@ -2985,7 +2970,6 @@
 ./hl/tools/testfiles/w-help1.ddl
 
 # hl fortran
-./hl/fortran/COPYING
 ./hl/fortran/Makefile.am
 ./hl/fortran/examples/Makefile.am
 ./hl/fortran/examples/run-hlfortran-ex.sh.in
@@ -3010,7 +2994,6 @@
 ./hl/fortran/test/tsttable.F90
 
 # hl c++
-./hl/c++/COPYING
 ./hl/c++/Makefile.am
 ./hl/c++/examples/Makefile.am
 ./hl/c++/examples/ptExampleFL.cpp
@@ -3023,7 +3006,6 @@
 ./hl/c++/test/Makefile.am
 
 # java
-./java/COPYING
 ./java/Makefile.am
 ./java/CMakeLists.txt