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Add wrapper scripts to pipe training tensors directly to Tensor2Bin #55

Merged
merged 12 commits into from
Sep 29, 2021
Merged

Add wrapper scripts to pipe training tensors directly to Tensor2Bin #55

merged 12 commits into from
Sep 29, 2021

Commits on Sep 23, 2021

  1. combine training tensor generation and compression in a single wrappe… 

    …r without intermediate output
    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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  2. implement running tensor creation within UnifyRepresentation and proc… 

    …essing piped output
    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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  3. turn off alarm when first subprocess finishes, to prevent crashes if … 

    …the second subprocess takes a while to close
    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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  4. MergeBin script

    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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  5. expose add_no_phasing option in CreateTrainingTensor, set min_af only… 

    … in full_alignment mode
    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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  6. tweaks to tensor generation to properly apply maximum variant ratio i… 

    …f duplicate positions are allowed
    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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  7. re-add 'phasing_info_in_bam' option to CreateTrainingTensor

    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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  8. make non-variant subsampling probabilistic again

    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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  9. update training docs

    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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  10. reduce threads used for tensor creation in training examples

    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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  11. update representation unification example documentation

    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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  12. fix tensor file names in training examples

    @ftostevin-ont
    ftostevin-ont committed Sep 23, 2021
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