Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
zhengzhenxian authored Jan 26, 2024
1 parent c9939fe commit d1c5096
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -91,7 +91,7 @@ For somatic variant calling using tumor only sample, please try [ClairS-TO](http
------

## Latest Updates
*v0.1.7 (Jan 25, 2024)* : 1. Added ONT Dorado 5khz HAC (`-p ont_r10_dorado_hac_5khz`) and Dorado 4khz HAC (`-p ont_r10_dorado_hac_4khz`) model, renamed all ONT Dorado SUP model, check [here](https://github.com/HKU-BAL/ClairS-TO/blob/main/README.md#pre-trained-models) for more details. 2. Enabled somatic variant calling in sex chromosomes. 3. Added `FAU`, `FCU`, `FGU`, `FTU`, `RAU`, `RCU`, `RGU`, and `RTU` tags.
*v0.1.7 (Jan 25, 2024)* : 1. Added ONT Dorado 5khz HAC (`-p ont_r10_dorado_hac_5khz`) and Dorado 4khz HAC (`-p ont_r10_dorado_hac_4khz`) model, renamed all ONT Dorado SUP model, check [here](https://github.com/HKU-BAL/ClairS/blob/main/README.md#pre-trained-models) for more details. 2. Enabled somatic variant calling in sex chromosomes. 3. Added `FAU`, `FCU`, `FGU`, `FTU`, `RAU`, `RCU`, `RGU`, and `RTU` tags.

*v0.1.6 (Sep 18)* : 1. Fixed an output bug that caused no VCF output if no Indel candidate was found (contributor @[Khi Pin](https://github.com/proteinosome)). 2. Fixed showing incorrect reference allele depth at a deletion region. 3. Added PacBio HiFi [quick demo](docs/pacbio_hifi_quick_demo.md).

Expand Down Expand Up @@ -140,8 +140,8 @@ ClairS trained both pileup and full-alignment models using GIAB samples, and car
| ONT | r1041_e82_400bps_sup_v410 | R10.4.1, 4khz | Dorado SUP | `ont_r10_dorado_sup_4khz` | GRCh38_no_alt | Minimap2 |
| ONT | r1041_e82_400bps_hac_v420 | R10.4.1, 5khz | Dorado HAC | `ont_r10_dorado_hac_5khz` | GRCh38_no_alt | Minimap2 |
| ONT | r1041_e82_400bps_hac_v410 | R10.4.1, 4khz | Dorado HAC | `ont_r10_dorado_hac_4khz` | GRCh38_no_alt | Minimap2 |
| ONT | r104_e81_sup_g5015 | R10.4/R10.4.1 | Guppy5 SUP | `ont_r10_guppy_sup` | GRCh38_no_alt | Minimap2 |
| ONT <sup>1</sup> | r941_prom_sup_g5014 | R9.4.1 | Guppy5 SUP | `ont_r9_guppy` | GRCh38_no_alt | Minimap2 |
| ONT | r104_e81_sup_g5015 | R10.4/R10.4.1, 4khz | Guppy5 SUP | `ont_r10_guppy` | GRCh38_no_alt | Minimap2 |
| ONT <sup>1</sup> | r941_prom_sup_g5014 | R9.4.1, 4khz | Guppy5 SUP | `ont_r9_guppy` | GRCh38_no_alt | Minimap2 |
| Illumina | ilmn | NovaSeq/HiseqX | - | `ilmn` | GRCh38 | BWA-MEM |
| PacBio HiFi <sup>2</sup> | hifi_sequel2 | Sequel II with Chemistry 2.0 | - | `hifi_sequel2` | GRCh38_no_alt | Minimap2 |
| PacBio HIFI | hifi_revio | Revio with SMRTbell prep kit 3.0 | - | `hifi_revio` | GRCh38_no_alt | Minimap2 |
Expand Down

0 comments on commit d1c5096

Please sign in to comment.