Support materials for Marius Rebmann's PhD thesis at the University of Cambridge
The scipts in the scRNA-seq folder contain notebooks for the analysis of the single cell RNA-seq dataset described in Sections 2.4.3-2.4.9 of the thesis.
The public-RNA-seq folder contains scripts for the analysis of public RNA-sequencing data described in Section 2.4.2. and used for Fig. 6.8. The data has been published at ACS Synth. Biol..
The Image-analysis folder contains the script used to quantify fluorescence for Fig. 6.9.
The Plasmid-maps folder contains the plasmid sequences described in the Section 2.1 of the thesis.
The plasmid maps can be viewed at Benchling