Installation fails at Compatibility Compiler Test 1 #47
Comments
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Good morning,
I an away from my computer for the next few days. I will try to work on a
solution Friday and Saturday.
…On Wed, Jan 22, 2025, 10:35 AM Ever Daniel Barreto ***@***.***> wrote:
*Describe the bug*
I'm trying to install WRF using WRF-MOSIT on a clean AlmaLinux 9.5 server,
the script fails when it reaches the "Compatibility Compiler Test 1":
Library Compatibility Tests
Test 1
01_fortran+c+netcdf_f.f:5: Error: Can't open included file 'netcdf.inc'
/usr/bin/ld: cannot find 01_fortran+c+netcdf_f.o: No such file or directory
/usr/bin/ld: cannot find -lnetcdff
/usr/bin/ld: cannot find -lnetcdf
collect2: error: ld returned 1 exit status
./WRF-MOSIT.sh: line 23044: ./a.out: No such file or directory
Compatibility Compiler Test 1 Failed
*To Reproduce*
Steps to reproduce the behavior:
1. Install AlmaLinux 9.5
2. Run WRF-MOSIT as per instructions in Github
*Expected behavior*
Script to finish successfully with the WRF model compiled
*Screenshots*
The script log is available here:
https://gist.github.com/everdaniel/681e66e65223a70ec5cd89508a056e40
*Desktop (please complete the following information):*
- OS: AlmaLinux
- Version 9.5
*Additional context*
While running the script it failed several times as the system was missing
some tools, so I had to install the following:
sudo dnf install git -y
sudo dnf install curl htop wget zip unzip
sudo dnf install epel-release
sudo dnf install tar
sudo dnf install gcc-gfortran
sudo dnf group install "Development Tools"
and I also needed to update automake and autoconf to the latest versions:
autoconf (GNU Autoconf) 2.72
automake (GNU automake) 1.16.5
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No worries thank you Will, I tried to do it with the Intel compilers but received a similar error as well: full log here: https://gist.github.com/everdaniel/33ea1026e0d13b4361cd3fb7a5ade098 |
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@everdaniel okay it looks like there is either a sudo password issue not being authorized on the machine. Are you the system admin for this sever and have sudo access? Almalinux is a tricky one but I will try to install it over the weekend on one of my spare hard drives and see what's failing. It could be a simple fix like the checks for apt or dnf didn't work as expected. |
Yes, I'm the system admin and I also have sudo access -- should I try to launch the script as sudo?
Oh I see, apologies I just double checked the README and it explicitily says "CentOS based systems not supported", I completely missed this bit very sorry. I'll just re-install the server and go with Ubuntu. |
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Centos should be supported I'll have to double check that
…On Thu, Jan 23, 2025, 6:35 AM Ever Daniel Barreto ***@***.***> wrote:
@everdaniel <https://github.com/everdaniel> okay it looks like there is
either a sudo password issue not being authorized on the machine. Are you
the system admin for this sever and have sudo access?
Yes, I'm the system admin and I also have sudo access -- should I try to
launch the script as sudo?
Almalinux is a tricky one but I will try to install it over the weekend on
one of my spare hard drives and see what's failing. It could be a simple
fix like the checks for apt or dnf didn't work as expected.
Oh I see, apologies I just double checked the README and it explicitily
says "CentOS based systems not supported", I completely missed this bit
very sorry. I'll just re-install the server and go with Ubuntu.
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I think I have found the source of the problem for AlmaLinux and all other RHL based systems. I am working on a fix now. |
Hi Will, let me know if there is any way I can help, I would be more than happy to, should I try with RockyLinux? |
|
Good morning,
Which version of WRF did you want to install? WRF-ARW? Chem?
…On Wed, Jan 29, 2025 at 8:42 PM Ever Daniel Barreto < ***@***.***> wrote:
@everdaniel <https://github.com/everdaniel> okay it looks like there is
either a sudo password issue not being authorized on the machine. Are you
the system admin for this sever and have sudo access?
Yes, I'm the system admin and I also have sudo access -- should I try to
launch the script as sudo?
Almalinux is a tricky one but I will try to install it over the weekend on
one of my spare hard drives and see what's failing. It could be a simple
fix like the checks for apt or dnf didn't work as expected.
Oh I see, apologies I just double checked the README and it explicitily
says "CentOS based systems not supported", I completely missed this bit
very sorry. I'll just re-install the server and go with Ubuntu.
I think I have found the source of the problem for AlmaLinux and all other
RHL based systems. I am working on a fix now.
Hi Will, let me know if there is any way I can help, I would be more than
happy to, should I try with RockyLinux?
—
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Yes Will, I was trying to install WRF-ARW |
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I can send you the script to try.
…On Thu, Jan 30, 2025, 7:35 AM Ever Daniel Barreto ***@***.***> wrote:
Good morning,
Which version of WRF did you want to install? WRF-ARW? Chem?
… <#m_8741670106291500891_>
Yes Will, I was trying to install WRF-ARW
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If we aren't connected on LinkedIn add me. I can send you the script to try
…On Thu, Jan 30, 2025, 7:35 AM Ever Daniel Barreto ***@***.***> wrote:
Good morning,
Which version of WRF did you want to install? WRF-ARW? Chem?
… <#m_8741670106291500891_>
Yes Will, I was trying to install WRF-ARW
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Awesome will do that now |
Describe the bug
I'm trying to install WRF using WRF-MOSIT on a clean AlmaLinux 9.5 server, the script fails when it reaches the "Compatibility Compiler Test 1":
To Reproduce
Steps to reproduce the behavior:
Expected behavior
Script to finish successfully with the WRF model compiled
Screenshots
The script log is available here: https://gist.github.com/everdaniel/681e66e65223a70ec5cd89508a056e40
Desktop (please complete the following information):
Additional context
While running the script it failed several times as the system was missing some tools, so I had to install the following:
sudo dnf install git -y
sudo dnf install curl htop wget zip unzip
sudo dnf install epel-release
sudo dnf install tar
sudo dnf install gcc-gfortran
sudo dnf group install "Development Tools"
and I also needed to update automake and autoconf to the latest versions:
autoconf (GNU Autoconf) 2.72
automake (GNU automake) 1.16.5
The text was updated successfully, but these errors were encountered: