working aws release #5535
Workflow file for this run
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name: Build | |
# Run this workflow every time a new commit pushed to your repository | |
on: | |
push | |
env: | |
DOTNET_NOLOGO: 1 | |
DOTNET_SKIP_FIRST_TIME_EXPERIENCE: true | |
jobs: | |
# Set the job key. The key is displayed as the job name | |
# when a job name is not provided | |
tests_db: | |
name: Run Database Tests | |
runs-on: windows-latest | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v4 | |
- name: Populate Databases.yaml | |
shell: bash | |
run: | | |
cat > ./Tools/rdmp/Databases.yaml << EOF | |
CatalogueConnectionString: Server=(localdb)\MSSQLLocalDB;Database=TEST_Catalogue;Trusted_Connection=True;TrustServerCertificate=true; | |
DataExportConnectionString: Server=(localdb)\MSSQLLocalDB;Database=TEST_DataExport;Trusted_Connection=True;TrustServerCertificate=true; | |
EOF | |
- name: Build | |
run: | | |
dotnet build --configuration Release --verbosity minimal | |
- name: Install MS SQL 2019 Express LocalDB | |
uses: crazy-max/ghaction-chocolatey@v3 | |
with: | |
args: install -r sqllocaldb --no-progress | |
- name: Initialise LocalDB | |
shell: bash | |
run: | | |
SqlLocalDB.exe create MSSQLLocalDB -s | |
sqlcmd -l 180 -S '(localdb)\MSSQLLocalDB' -Q "SELECT @@VERSION;" | |
sed -i'' -e 's/localhost/\(localdb\)\\MSSQLLocalDB/' Tests.Common/TestDatabases.txt | |
- uses: shogo82148/actions-setup-mysql@v1 | |
with: | |
mysql-version: '8.0' | |
root-password: 'YourStrong!Passw0rd' | |
auto-start: true | |
- name: Build | |
run: dotnet build --configuration Release --verbosity minimal | |
- name: Initialise RDMP | |
run: | | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- install --createdatabasetimeout 180 "(localdb)\MSSQLLocalDB" TEST_ -e | |
- name: Create MySql Logging, DQE and Cohort Building Cache Db | |
run: | | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- createnewexternaldatabaseserver LiveLoggingServer_ID "DatabaseType:MySQL:Server=127.0.0.1;Uid=root;Pwd=YourStrong!Passw0rd;Database=rdmp_logging2" --dir ~/rdmp/rdmp-yaml/ | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- createnewexternaldatabaseserver DQE "DatabaseType:MySQL:Server=127.0.0.1;Uid=root;Pwd=YourStrong!Passw0rd;Database=rdmp_dqe" --dir ~/rdmp/rdmp-yaml/ | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- createnewexternaldatabaseserver CohortIdentificationQueryCachingServer_ID "DatabaseType:MySQL:Server=127.0.0.1;Uid=root;Pwd=YourStrong!Passw0rd;Database=rdmp_cache" --dir ~/rdmp/rdmp-yaml/ | |
- name: Run integration test scripts | |
run: | | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- -f ./scripts/create_list_destroy_catalogue.yaml | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- -f ./scripts/create_cohort.yaml | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- -f ./scripts/create_dataload.yaml | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- -f ./scripts/orphan_extractable_column.yaml | |
- name: Test (DB) | |
shell: bash | |
run: | | |
rm -rf coverage | |
dotnet test Rdmp.UI.Tests/Rdmp.UI.Tests.csproj --nologo --collect:"XPlat Code Coverage" --no-build --verbosity minimal -c Release --results-directory coverage -- DataCollectionRunSettings.DataCollectors.DataCollector.Configuration.Format=lcov | |
mv `find coverage -type f` db-ui.lcov | |
dotnet test Rdmp.Core.Tests/Rdmp.Core.Tests.csproj --nologo --collect:"XPlat Code Coverage" --no-build --verbosity minimal -c Release --results-directory coverage -- DataCollectionRunSettings.DataCollectors.DataCollector.Configuration.Format=lcov | |
mv `find coverage -type f` db-core.lcov | |
- uses: coverallsapp/github-action@v2.3.0 | |
with: | |
github-token: ${{ secrets.github_token }} | |
files: ./db-ui.lcov ./db-core.lcov | |
flag-name: unit tests | |
tests_file_system: | |
name: Run File System Tests | |
runs-on: windows-latest | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v4 | |
- name: Populate Databases.yaml | |
shell: bash | |
run: | | |
cat > ./Tools/rdmp/Databases.yaml << EOF | |
CatalogueConnectionString: Server=(localdb)\MSSQLLocalDB;Database=TEST_Catalogue;Trusted_Connection=True;TrustServerCertificate=true; | |
DataExportConnectionString: Server=(localdb)\MSSQLLocalDB;Database=TEST_DataExport;Trusted_Connection=True;TrustServerCertificate=true; | |
EOF | |
- name: Build | |
run: | | |
dotnet build --configuration Release --verbosity minimal | |
- name: Install MS SQL 2019 Express LocalDB | |
uses: crazy-max/ghaction-chocolatey@v3 | |
with: | |
args: install -r sqllocaldb --no-progress | |
- name: Initialise LocalDB | |
shell: bash | |
run: | | |
SqlLocalDB.exe create MSSQLLocalDB -s | |
sqlcmd -l 180 -S '(localdb)\MSSQLLocalDB' -Q "SELECT @@VERSION;" | |
sed -i'' -e 's/localhost/\(localdb\)\\MSSQLLocalDB/' Tests.Common/TestDatabases.txt | |
- uses: shogo82148/actions-setup-mysql@v1 | |
with: | |
mysql-version: '8.0' | |
root-password: 'YourStrong!Passw0rd' | |
auto-start: true | |
- name: Build | |
run: dotnet build --configuration Release --verbosity minimal | |
- name: Initialise RDMP | |
run: | | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- install --createdatabasetimeout 180 "(localdb)\MSSQLLocalDB" TEST_ -e | |
- name: Create MySql Logging, DQE and Cohort Building Cache Db | |
run: | | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- createnewexternaldatabaseserver LiveLoggingServer_ID "DatabaseType:MySQL:Server=127.0.0.1;Uid=root;Pwd=YourStrong!Passw0rd;Database=rdmp_logging2" --dir ~/rdmp/rdmp-yaml/ | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- createnewexternaldatabaseserver DQE "DatabaseType:MySQL:Server=127.0.0.1;Uid=root;Pwd=YourStrong!Passw0rd;Database=rdmp_dqe" --dir ~/rdmp/rdmp-yaml/ | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- createnewexternaldatabaseserver CohortIdentificationQueryCachingServer_ID "DatabaseType:MySQL:Server=127.0.0.1;Uid=root;Pwd=YourStrong!Passw0rd;Database=rdmp_cache" --dir ~/rdmp/rdmp-yaml/ | |
- name: Run integration test scripts | |
run: | | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- -f ./scripts/create_list_destroy_catalogue.yaml | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- -f ./scripts/create_cohort.yaml | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- -f ./scripts/create_dataload.yaml | |
dotnet run -c Release --no-build --project Tools/rdmp/rdmp.csproj -- -f ./scripts/orphan_extractable_column.yaml | |
- name: Test with local file system | |
shell: bash | |
run: | | |
echo "UseFileSystemRepo: true" >> Tests.Common/TestDatabases.txt | |
dotnet test Rdmp.UI.Tests/Rdmp.UI.Tests.csproj --nologo --collect:"XPlat Code Coverage" --no-build --verbosity minimal -c Release --results-directory coverage -- DataCollectionRunSettings.DataCollectors.DataCollector.Configuration.Format=lcov | |
mv `find coverage -type f` fs-ui.lcov | |
dotnet test Rdmp.Core.Tests/Rdmp.Core.Tests.csproj --nologo --collect:"XPlat Code Coverage" --no-build --verbosity minimal -c Release --results-directory coverage -- DataCollectionRunSettings.DataCollectors.DataCollector.Configuration.Format=lcov | |
mv `find coverage -type f` fs-core.lcov | |
- uses: coverallsapp/github-action@v2.3.0 | |
with: | |
github-token: ${{ secrets.github_token }} | |
files: ./fs-ui.lcov ./fs-core.lcov | |
flag-name: unit tests | |
bundle: | |
name: Bundle Build | |
runs-on: windows-latest | |
steps: | |
- name: Checkout code | |
uses: actions/checkout@v4 | |
- name: Determine RDMP build version | |
id: version | |
shell: bash | |
run: perl -ne "print \"rdmpversion=\$1\n\" if /AssemblyInformationalVersion\(\"([0-9a-z.-]+)\"\)/;" SharedAssemblyInfo.cs >> $GITHUB_OUTPUT | |
- name: Setup .NET Core | |
uses: actions/setup-dotnet@v4.0.1 | |
with: | |
dotnet-version: 7.0.x | |
- name: BundleSource | |
shell: bash | |
run: | | |
mkdir -p Tools/BundleUpSourceIntoZip/output | |
rm -f Tools/BundleUpSourceIntoZip/output/SourceCodeForSelfAwareness.zip | |
echo "dir /s/b *.cs *.xml > srcbitsa.txt" | cmd | |
perl -pe '$_=reverse' < srcbitsa.txt | sort -t'\' -k1,1 -u | perl -pe '$_=reverse' > srcbits.txt | |
echo 7z a -mx=9 Tools/BundleUpSourceIntoZip/output/SourceCodeForSelfAwareness.zip @srcbits.txt | cmd | |
- name: Package | |
run: | | |
dotnet publish Application/ResearchDataManagementPlatform/ResearchDataManagementPlatform.csproj -r win-x64 --self-contained -c Release -o PublishWinForms -p:GenerateDocumentationFile=false -p:PublishSingleFile=true -p:PublishReadyToRun=true -p:IncludeNativeLibrariesForSelfExtract=true --verbosity minimal --nologo | |
dotnet publish Tools/rdmp/rdmp.csproj -r win-x64 --self-contained -c Release -o PublishWindows -p:GenerateDocumentationFile=false -p:PublishSingleFile=true -p:PublishReadyToRun=true --verbosity minimal -p:IncludeNativeLibrariesForSelfExtract=true --nologo | |
dotnet publish Tools/rdmp/rdmp.csproj -r linux-x64 --self-contained -c Release -o PublishLinux -p:GenerateDocumentationFile=false -p:PublishSingleFile=true -p:PublishReadyToRun=true --verbosity minimal --nologo | |
- name: Temporary Bundle of ddls for auto-updater | |
shell: bash | |
run: | | |
cp -r Application/ResearchDataManagementPlatform/bin/Release/net8.0-windows/win-x64/runtimes ./PublishWinForms | |
cp -r Application/ResearchDataManagementPlatform/bin/Release/net8.0-windows/win-x64/x64 ./PublishWinForms | |
cp Application/ResearchDataManagementPlatform/bin/Release/net8.0-windows/win-x64/D3DCompiler_47_cor3.dll ./PublishWinForms | |
cp Application/ResearchDataManagementPlatform/bin/Release/net8.0-windows/win-x64/mongocrypt.dll ./PublishWinForms | |
cp Application/ResearchDataManagementPlatform/bin/Release/net8.0-windows/win-x64/PenImc_cor3.dll ./PublishWinForms | |
cp Application/ResearchDataManagementPlatform/bin/Release/net8.0-windows/win-x64/PresentationNative_cor3.dll ./PublishWinForms | |
cp Application/ResearchDataManagementPlatform/bin/Release/net8.0-windows/win-x64/vcruntime140_cor3.dll ./PublishWinForms | |
cp Application/ResearchDataManagementPlatform/bin/Release/net8.0-windows/win-x64/WebView2Loader.dll ./PublishWinForms | |
cp Application/ResearchDataManagementPlatform/bin/Release/net8.0-windows/win-x64/wpfgfx_cor3.dll ./PublishWinForms | |
- name: Install Plugins | |
shell: bash | |
run: | | |
for plugin in https://api.github.com/repos/SMI/RdmpDicom/releases/latest https://api.github.com/repos/HICServices/HicPlugin/releases/latest https://api.github.com/repos/HICServices/RdmpExtensions/releases/latest | |
do | |
PluginName="$(cut -d/ -f6 <<< $plugin)" | |
NAME="$(curl -s $plugin | grep "browser_download_url.*$PluginName.*rdmp" | cut -d : -f 2,3 | cut -d "\"" -f 2)" | |
curl -OL $NAME | |
done | |
for platform in PublishWindows PublishLinux PublishWinForms | |
do | |
cp *.rdmp $platform | |
done | |
rm *.rdmp | |
- name: Sign & zip | |
shell: bash | |
run: | | |
dotnet tool install --global AzureSignTool | |
AzureSignTool sign -kvu "${{ secrets.AZURE_KEY_VAULT_URI }}" -kvi "${{ secrets.AZURE_CLIENT_ID }}" -kvt "${{ secrets.AZURE_TENANT_ID }}" -kvs "${{ secrets.AZURE_CLIENT_SECRET }}" -kvc ${{ secrets.AZURE_CERT_NAME }} -tr http://timestamp.digicert.com -v PublishWindows/rdmp.exe | |
AzureSignTool sign -kvu "${{ secrets.AZURE_KEY_VAULT_URI }}" -kvi "${{ secrets.AZURE_CLIENT_ID }}" -kvt "${{ secrets.AZURE_TENANT_ID }}" -kvs "${{ secrets.AZURE_CLIENT_SECRET }}" -kvc ${{ secrets.AZURE_CERT_NAME }} -tr http://timestamp.digicert.com -v PublishWinForms/ResearchDataManagementPlatform.exe | |
mkdir -p dist | |
(cd PublishWindows ; echo 7z a -mx=9 ../dist/rdmp-${{ steps.version.outputs.rdmpversion }}-cli-win-x64.zip . | cmd) | |
(cd PublishLinux ; echo 7z a -mx=0 ../dist/rdmp-${{ steps.version.outputs.rdmpversion }}-cli-linux-x64.zip . | cmd) | |
mv PublishLinux rdmp-${{ steps.version.outputs.rdmpversion }}-cli-linux | |
echo 7z a dist/rdmp-${{ steps.version.outputs.rdmpversion }}-cli-linux-x64.tar rdmp-${{ steps.version.outputs.rdmpversion }}-cli-linux | cmd | |
(cd PublishWinForms ; echo 7z a -mx=9 ../dist/rdmp-${{ steps.version.outputs.rdmpversion }}-client.zip . | cmd) | |
- name: Install Perl dependencies | |
uses: shogo82148/actions-setup-perl@v1.30.0 | |
with: | |
install-modules-with: cpanm | |
install-modules: Archive::Zip Archive::Tar | |
- name: Fix execute permissions | |
if: contains(github.ref, 'refs/tags/v') || contains('refs/heads/main refs/heads/develop',github.ref) | |
shell: perl {0} | |
run: | | |
use strict; | |
use warnings; | |
use Archive::Zip qw( :ERROR_CODES :CONSTANTS ); | |
use Archive::Tar; | |
my ($tarname,$zipname)=('dist/rdmp-${{ steps.version.outputs.rdmpversion }}-cli-linux-x64.tar','dist/rdmp-${{ steps.version.outputs.rdmpversion }}-cli-linux-x64.zip'); | |
# Find rdmp in .tar, set permissions 0755 | |
my $tar=Archive::Tar->new($tarname) || die "read $tarname:$!\n"; | |
my @tarbits=$tar->get_files(); | |
foreach my $bit (@tarbits) { | |
$bit->chmod('0755') if $bit->name =~ /\/rdmp$/; | |
} | |
$tar->write( $tarname ); | |
# Find rdmp in .zip, set permissions 0755 | |
my $srczip = Archive::Zip->new($zipname); | |
my $zip=Archive::Zip->new(); | |
foreach my $bit ($srczip->members()) { | |
print "Adding ",$bit->fileName(),"\n"; | |
my $m=$zip->addString($bit->contents(),$bit->fileName()); | |
$m->fileName($bit->fileName()); | |
my $iszip=$bit->fileName() =~ /\.zip$/i; | |
$m->desiredCompressionMethod($iszip ? COMPRESSION_STORED : COMPRESSION_DEFLATED); | |
$m->desiredCompressionLevel($iszip ? 0 : 9 ); | |
} | |
$zip->memberNamed('rdmp')->unixFileAttributes( 0755 ); | |
$zip->overwriteAs($zipname); | |
- name: Compress tar | |
if: contains(github.ref, 'refs/tags/v') || contains('refs/heads/main refs/heads/develop',github.ref) | |
run: | | |
7z a -txz dist/rdmp-${{ steps.version.outputs.rdmpversion }}-cli-linux-x64.tar.xz dist/rdmp-${{ steps.version.outputs.rdmpversion }}-cli-linux-x64.tar | |
rm dist/rdmp-${{ steps.version.outputs.rdmpversion }}-cli-linux-x64.tar | |
- name: Build Nuget packages | |
if: contains(github.ref, 'refs/tags/v') | |
shell: bash | |
run: | | |
for i in Rdmp.Core/Rdmp.Core.csproj Rdmp.UI/Rdmp.UI.csproj Tests.Common/Tests.Common.csproj | |
do | |
dotnet pack $i -c Release --include-symbols --nologo -o . -v:m -p:Version=${{ steps.version.outputs.rdmpversion }} | |
done | |
- name: Calculate SHA256SUMS | |
if: contains(github.ref, 'refs/tags/v') | |
run: '&{foreach ($i in Get-ChildItem dist -Exclude *SUMS|Get-FileHash) { echo "$($i.Hash) $(echo $i | Split-Path -Leaf)" }} > dist/SHA256SUMS' | |
- name: Archive production artifacts | |
uses: actions/upload-artifact@v4 | |
with: | |
name: dist | |
path: | | |
dist | |
- name: Cache Build | |
id: cache-build | |
uses: actions/cache/save@v4 | |
with: | |
path: ${{ github.workspace }}/ | |
key: ${{ github.sha }}-your-cache-key-bundled | |
production-upload: | |
name: Production Upload | |
runs-on: windows-latest | |
needs: ['bundle','tests_db','tests_file_system'] | |
if: contains(github.ref, 'refs/tags/v') | |
steps: | |
- uses: actions/cache/restore@v4 | |
id: restore-build | |
with: | |
path: ${{ github.workspace }}/ | |
key: ${{ github.sha }}-your-cache-key-bundled | |
- name: Determine RDMP build version | |
id: version | |
shell: bash | |
run: perl -ne "print \"rdmpversion=\$1\n\" if /AssemblyInformationalVersion\(\"([0-9a-z.-]+)\"\)/;" SharedAssemblyInfo.cs >> $GITHUB_OUTPUT | |
- name: Upload Nuget packages | |
run: dotnet nuget push HIC.RDMP.Plugin*${{ steps.version.outputs.rdmpversion }}.nupkg -s https://api.nuget.org/v3/index.json --skip-duplicate -k ${{ secrets.NUGET_KEY }} | |
- name: Upload binaries to release | |
uses: svenstaro/upload-release-action@2.9.0 | |
with: | |
repo_token: ${{ secrets.GITHUB_TOKEN }} | |
file: dist/* | |
tag: ${{ github.ref }} | |
overwrite: true | |
file_glob: true |