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@HopkinsIDD

Infectious Disease Dynamics Group at Johns Hopkins University

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  1. COVIDScenarioPipeline COVIDScenarioPipeline Public archive

    Public shared code for doing scenario forecasting and creating reports for various governmental entities.

    HTML 104 47

  2. ncov_incubation ncov_incubation Public

    Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools

    57 21

  3. covidRTPCR covidRTPCR Public

    Analysis of RT-PCR sensitivity by day since exposure or symptom onset

    Stan 24 11

  4. hit-covid hit-covid Public

    Data and Codebook for the HIT-COVID Project

    21 7

  5. nCoV-Sandbox nCoV-Sandbox Public

    HTML 15 4

  6. ForecastFramework ForecastFramework Public

    Create modular models. Quickly prototype models whose input includes (multiple) time series data. Create pieces of model use cases separately, and swap out particular models as desired. Create mode…

    R 12 4

Repositories

Showing 10 of 95 repositories
  • rsv-forecast-hub_website Public

    RSV Forcast Hub website repo

    HopkinsIDD/rsv-forecast-hub_website’s past year of commit activity
    HTML 0 1 23 0 Updated Dec 20, 2024
  • rsv-forecast-hub Public

    US RSV Forecast Hub

    HopkinsIDD/rsv-forecast-hub’s past year of commit activity
    R 7 MIT 12 3 0 Updated Dec 20, 2024
  • cholera-mapping-pipeline Public

    Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure

    HopkinsIDD/cholera-mapping-pipeline’s past year of commit activity
    HTML 1 3 122 6 Updated Dec 19, 2024
  • flepiMoP Public

    The Flexible Epidemic Modeling Pipeline

    HopkinsIDD/flepiMoP’s past year of commit activity
    HTML 9 GPL-3.0 4 134 (12 issues need help) 11 Updated Dec 18, 2024
  • luminex-plateqc-app Public

    Simple shiny app to generate a QC report for Luminex plate readouts

    HopkinsIDD/luminex-plateqc-app’s past year of commit activity
    R 0 0 0 0 Updated Dec 16, 2024
  • epi-econ Public
    HopkinsIDD/epi-econ’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Dec 6, 2024
  • HopkinsIDD/ForecastHospBurden’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 6, 2024
  • grande-saline-cholera-serosurvey Public

    Public Repository for Reanalysis of Cholera Serosurvey from Grand Saline Haiti

    HopkinsIDD/grande-saline-cholera-serosurvey’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Dec 3, 2024
  • HopkinsIDD/flepimop_sample’s past year of commit activity
    HTML 1 7 0 0 Updated Nov 26, 2024
  • HopkinsIDD/rethinking_cholera_diagnostics’s past year of commit activity
    0 0 0 0 Updated Nov 18, 2024

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