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Workaround for https://github.com/pypa/pip/issues/3165 #21

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merged 1 commit into from
Apr 5, 2018
Merged

Workaround for https://github.com/pypa/pip/issues/3165 #21

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4 changes: 2 additions & 2 deletions site/datasets/census/hca-download-census
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Original file line number Diff line number Diff line change
Expand Up @@ -18,9 +18,9 @@ function initialize() {
function install_hca_tool() {
echo "Installing hca tool (see ${LOGFILE} for errors)..."

if ! pip install --upgrade hca >> ${LOGFILE} 2>&1 ; then
if ! pip install hca --upgrade --ignore-installed six >> ${LOGFILE} 2>&1 ; then
echo -e "\n\nThat failed, trying again as superuser. You may be prompted for your password..."
sudo pip install --upgrade hca 2>&1 >> ${LOGFILE}
sudo pip install hca --upgrade --ignore-installed six 2>&1 >> ${LOGFILE}
fi

HCA=hca
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4 changes: 2 additions & 2 deletions site/datasets/ischaemic-sensitivity/hca-download-ischaemic-sensitivity
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Original file line number Diff line number Diff line change
Expand Up @@ -18,9 +18,9 @@ function initialize() {
function install_hca_tool() {
echo "Installing hca tool (see ${LOGFILE} for errors)..."

if ! pip install --upgrade hca >> ${LOGFILE} 2>&1 ; then
if ! pip install hca --upgrade --ignore-installed six >> ${LOGFILE} 2>&1 ; then
echo -e "\n\nThat failed, trying again as superuser. You may be prompted for your password..."
sudo pip install --upgrade hca 2>&1 >> ${LOGFILE}
sudo pip install hca --upgrade --ignore-installed six 2>&1 >> ${LOGFILE}
fi

HCA=hca
Expand Down
4 changes: 2 additions & 2 deletions site/datasets/melanoma/hca-download-melanoma
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Original file line number Diff line number Diff line change
Expand Up @@ -18,9 +18,9 @@ function initialize() {
function install_hca_tool() {
echo "Installing hca tool (see ${LOGFILE} for errors)..."

if ! pip install --upgrade hca >> ${LOGFILE} 2>&1 ; then
if ! pip install hca --upgrade --ignore-installed six >> ${LOGFILE} 2>&1 ; then
echo -e "\n\nThat failed, trying again as superuser. You may be prompted for your password..."
sudo pip install --upgrade hca 2>&1 >> ${LOGFILE}
sudo pip install hca --upgrade --ignore-installed six 2>&1 >> ${LOGFILE}
fi

HCA=hca
Expand Down