Jupyter Notebook for Literate Computing for Reproducible Infrastructure

Jupyter Notebook server which bundles a set of tools for Literate Computing for Reproducible Infrastructure. This bundle shows how to implement robust and reliable operational procedure rather than explorative procedure within Jupyter’s GUI.

The goals for Literate Computing tools are:

• Preventing miss-operation; once a cell has been executed, it “freezes” against unintended execution. Also you can “lock” cells for unintended modification.
• Adding a perspective into a notebook; markdown’s hierarchy is collapsible as document according to your focus. However, embedded cells underneath are represented as dots and run through with a click as a routine procedure.

What it Gives You

• Jupyter Notebook 5.0.x
• Python2/Python3 kernel with LC_wrapper https://github.com/NII-cloud-operation/Jupyter-LC_wrapper
• Extensions
  • multi_outputs https://github.com/NII-cloud-operation/Jupyter-multi_outputs
  • run_through https://github.com/NII-cloud-operation/Jupyter-LC_run_through
  • nblineage https://github.com/NII-cloud-operation/Jupyter-LC_nblineage
  • index https://github.com/NII-cloud-operation/Jupyter-LC_index
  • sidestickies https://github.com/NII-cloud-operation/sidestickies

Basic Use

You can start the Notebook server on port 8888 with the following command.

docker run -it --rm -p 8888:8888 niicloudoperation/notebook

You can login the Notebook server with the authentication token in the startup message.

Docker Options

You may customize the execution of Docker container and the Notebook server contained with the following optional arguments.

• -e lc_wrapper_force=on - Force summarizing and logging mode of lc_wrapper (via env)
• -e TZ=JST-9 - Specify the container timezone
• -e PASSWORD=MY_UNBREAKABLE_PASS - Set a initial password
• -v /some/host/folder/for/work:/notebooks - Mounts the host directory to the working directory in the container
• -e SIDESTICKIES_SCRAPBOX_PROJECT_ID=value -e SIDESTICKIES_SCRAPBOX_COOKIE_CONNECT_SID=value - Specify Scrapbox account to sidestickies. You can enable sidestickies extension via the Nbextensions tab.