2.0.0

Automatically generated by python-semantic-release

CHANGELOG.md

@@ -2,6 +2,34 @@
 
 <!--next-version-placeholder-->
 
+## v2.0.0 (2021-12-22)
+### Feature
+* **lift.smk:** Mask gtf_converted as tempfile ([`082ef70`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/082ef70ed59ee3a0b55a19c18bca21fe44f0713e))
+* **rules:** Support CellRanger ([`4398450`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/43984501938a5ce961257cf220554d3f59c2082c))
+
+### Fix
+* **input_resources.smk:** Add conda environment ([`0383d86`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/0383d860053e1df3a2312fd28774801a172cb782))
+* **cellranger.smk:** Correct mkref and count ([`df1ee8a`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/df1ee8ab74285eba946e774f1dba14d94f3547ea))
+* **common.smk:** Remove print statement ([`890902b`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/890902bd06ea6e7febb96da8338a3bcaac20c413))
+* **cellranger_resources.smk:** Correct allowed biotypes ([`0426d07`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/0426d07215fa43625344af1db335946a8ff8428f))
+* **qc_reads.smk:** Increase threads for fastqc ([`d2ce90d`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/d2ce90d38b9f990186377d24149344bf58cea041))
+* **lift.smk:** Correct to benchmarks ([`d10adf7`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/d10adf7090ada749c75b960be23c43d033f84ec1))
+* **cellranger_resources.smk:** Correct directory location ([`10cfd2a`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/10cfd2a065a38e732cbdb288f15e65441e1eacd8))
+* **Snakefile:** Specify correct outputs ([`7e383b2`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/7e383b220d0623741acd1530bca2746f02bdef8a))
+* **qc_reads.smk:** Remove star aggregation ([`89a727b`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/89a727be4d181e37a6d38fdda92dbb7c5d1004af))
+* **common.smk:** Change aggregation functions ([`482740a`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/482740a7ac3c1fcc1af806225b6776803827849a))
+* **schema:** Expand CellRanger parameters ([`efcd9d8`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/efcd9d80dfcdcf00bef9267b99709f437a7ef57e))
+* **qc_reads.smk:** Corret FastQ collection ([`a4938a6`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/a4938a6ec3c993cb96e1e3bda9b1d4a573cc4549))
+* **input_resources.smk:** Disable container ([`c8612fb`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/c8612fb334f9ea3b736caf2f68892bc42604e3eb))
+* **star.smk:** Correct input ([`89592ff`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/89592ffb627065cab52e9028911290202a88c13f))
+
+### Breaking
+* Though the reversion does not impact apparent function significantly, the outputs and underlying analysis are changed enough to warrant this BREAKING.  ([`4398450`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/43984501938a5ce961257cf220554d3f59c2082c))
+
+### Documentation
+* **counts.rst:** Add missing report file ([`10a45c2`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/10a45c27d61971a6f7f4f3c98f61920ca695016f))
+* **rulegraph.svg:** Update rulegraph for new pipeline ([`1cca3e1`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/1cca3e1b31badc6e4ea2a8283161fd0153565f5f))
+
 ## v1.1.0 (2021-12-06)
 ### Feature
 * **move_coordinates.bash:** Set `-x` for improved logging ([`85d88d0`](https://github.com/IMS-Bio2Core-Facility/BIC092/commit/85d88d0ff3f9d7b8e7e6b3bb502a4ab9139f80d9))

pyproject.toml

@@ -1,5 +1,5 @@
 [tool.version]
-version = "1.1.0"
+version = "2.0.0"
 
 [tool.semantic_release]
 branch = "main"