Unknown key-value pair handling has been added #72
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hkir-dev
requested changes
May 13, 2024
pandasaurus_cxg/anndata_enricher.py
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| # "unknown" patch | ||
| if "unknown" in self.seed_dict: | ||
| del self.seed_dict["unknown"] | ||
| self.seed_dict["C::0000000"] = "cell" |
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can we consider case insensitive search of unknown
hkir-dev
approved these changes
May 13, 2024
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{"unknown": "unknown"} pair will be removed from seed dict and replaced by {"C::0000000": "cell"} pair to cover very rare issue within CxG datasets. Example datasets are https://cellxgene.cziscience.com/e/35081d47-99bf-4507-9541-735428df9a9f.cxg/ and https://cellxgene.cziscience.com/e/3a15ab1c-c36c-4842-9a3e-47e6ffd0ba6f.cxg/