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* IonChannelGene schema * Transfection schema * PatchClamp schema * HostCell schema * Cell schema * TraceCollection schema * added GeneOntologyTermShape * added CellLineOntologyTermShape * created new data context with missing terms
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modules/commons/src/main/resources/contexts/neurosciencegraph/core/data/v1.0.4.json
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...src/main/resources/schemas/neurosciencegraph/commons/typedlabeledontologyterm/v0.1.3.json
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|---|---|---|
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| { | ||
| "@context": [ | ||
| "{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0", | ||
| { | ||
| "this": "{{base}}/schemas/neurosciencegraph/commons/typedlabeledontologyterm/v0.1.2/shapes/" | ||
| } | ||
| ], | ||
| "imports": [ | ||
| "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1" | ||
| ], | ||
| "@type": "nxv:Schema", | ||
| "shapes": [ | ||
| { | ||
| "@id": "this:SpeciesOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a species", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:ModelSimulationStatusOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a model simulation status", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:SexOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a sex", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:CellTypeOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a cell type", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:ObjectiveTypeOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a microscope objective type", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:BrainRegionOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a brain region", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:StimulusTypeOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a stimulus type", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:EcodeOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing an eCode", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:RoleOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a role", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:LicenseOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a license", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:SomaTypeTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing the types of somas of the reconstructed cell", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:UnitOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a unit code", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:LabelingCompoundOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a labeling compound", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:MorphologicalCellTypeOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a morphological cell type", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:ElectricalCellTypeOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing an electrical cell type", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:CellLineOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a cell line", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| }, | ||
| { | ||
| "@id": "this:GeneOntologyTermShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "The shape of an ontology term representing a gene", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/labeledontologyentity/v0.1.1/shapes/LabeledOntologyEntityShape" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } |
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modules/core/src/main/resources/schemas/neurosciencegraph/core/tracecollection/v0.1.0.json
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| { | ||
| "@context": [ | ||
| "{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0", | ||
| { | ||
| "this": "{{base}}/schemas/neurosciencegraph/core/tracecollection/v0.1.0/shapes/" | ||
| } | ||
| ], | ||
| "@type": "nxv:Schema", | ||
| "imports": [ | ||
| "{{base}}/schemas/neurosciencegraph/commons/collection/v0.2.0" | ||
| ], | ||
| "shapes": [ | ||
| { | ||
| "@id": "this:TraceCollectionShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "Trace Collection", | ||
| "comment": "Trace collection.", | ||
| "targetClass": "nsg:TraceCollection", | ||
| "and" : [ | ||
| { | ||
| "node" : "{{base}}/schemas/neurosciencegraph/commons/collection/v0.2.0/shapes/CollectionShape" | ||
| }, | ||
| { | ||
| "property" : [ | ||
| { | ||
| "path" : "prov:hadMember", | ||
| "name" : "Member", | ||
| "description" : "The traces that are member of the collection.", | ||
| "class" : "nsg:Trace", | ||
| "seeAlso" : "{{base}}/schemas/neurosciencegraph/electrophysiology/trace/v1.0.0/shapes/TraceShape" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } |
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modules/experiment/src/main/resources/schemas/neurosciencegraph/experiment/cell/v0.1.0.json
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| { | ||
| "@context": [ | ||
| "{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0", | ||
| { | ||
| "this": "{{base}}/schemas/neurosciencegraph/experiment/cell/v0.1.0/shapes/" | ||
| } | ||
| ], | ||
| "@type": "nxv:Schema", | ||
| "imports": [ | ||
| "{{base}}/schemas/neurosciencegraph/commons/entity/v1.0.0" | ||
| ], | ||
| "shapes": [ | ||
| { | ||
| "@id": "this:CellShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "Cell shape definition", | ||
| "targetClass": "nsg:Cell", | ||
| "nodeKind": "sh:BlankNodeOrIRI", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/entity/v1.0.0/shapes/EntityShape" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } |
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...s/experiment/src/main/resources/schemas/neurosciencegraph/experiment/hostcell/v0.1.0.json
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| { | ||
| "@context": [ | ||
| "{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0", | ||
| { | ||
| "this": "{{base}}/schemas/neurosciencegraph/experiment/hostcell/v0.1.0/shapes/" | ||
| } | ||
| ], | ||
| "@type": "nxv:Schema", | ||
| "imports": [ | ||
| "{{base}}/schemas/neurosciencegraph/commons/entity/v1.0.0", | ||
| "{{base}}/schemas/neurosciencegraph/commons/typedlabeledontologyterm/v0.1.3" | ||
| ], | ||
| "shapes": [ | ||
| { | ||
| "@id": "this:HostCellShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "Host cell shape definition", | ||
| "targetClass": "nsg:HostCell", | ||
| "nodeKind": "sh:BlankNodeOrIRI", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/entity/v1.0.0/shapes/EntityShape" | ||
| }, | ||
| { | ||
| "property": [ | ||
| { | ||
| "path": "nsg:cellLine", | ||
| "name": "Cell line", | ||
| "description": "The cell line to which the host cell belongs. Cell lines may come fom the cell line ontology: http://www.clo-ontology.org/", | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/typedlabeledontologyterm/v0.1.3/shapes/CellLineOntologyTermShape", | ||
| "maxCount": 1 | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } |
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...riment/src/main/resources/schemas/neurosciencegraph/experiment/ionchannelgene/v0.1.0.json
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| { | ||
| "@context": [ | ||
| "{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0", | ||
| { | ||
| "this": "{{base}}/schemas/neurosciencegraph/experiment/ionchannelgene/v0.1.0/shapes/" | ||
| } | ||
| ], | ||
| "@type": "nxv:Schema", | ||
| "imports": [ | ||
| "{{base}}/schemas/neurosciencegraph/commons/entity/v1.0.0", | ||
| "{{base}}/schemas/neurosciencegraph/commons/typedlabeledontologyterm/v0.1.3" | ||
|
|
||
| ], | ||
| "shapes": [ | ||
| { | ||
| "@id": "this:IonChannelGeneShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "Ion channel gene shape definition", | ||
| "targetClass": "nsg:IonChannelGene", | ||
| "nodeKind": "sh:BlankNodeOrIRI", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/entity/v1.0.0/shapes/EntityShape" | ||
| }, | ||
| { | ||
| "property": [ | ||
| { | ||
| "path": "nsg:ionChannelGene", | ||
| "name": "Ion channel gene", | ||
| "description": "The ion channel gene. Ion channel genes should come fom the gene ontology: http://www.geneontology.org/", | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/typedlabeledontologyterm/v0.1.3/shapes/GeneOntologyTermShape", | ||
| "maxCount": 1 | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } |
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...experiment/src/main/resources/schemas/neurosciencegraph/experiment/patchclamp/v0.1.0.json
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| { | ||
| "@context": [ | ||
| "{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0", | ||
| { | ||
| "this": "{{base}}/schemas/neurosciencegraph/experiment/patchclamp/v0.1.0/shapes/" | ||
| } | ||
| ], | ||
| "imports": [ | ||
| "{{base}}/schemas/neurosciencegraph/commons/activity/v0.1.4" | ||
|
|
||
| ], | ||
| "@type": "nxv:Schema", | ||
| "shapes": [ | ||
| { | ||
| "@id": "this:PatchClampShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "Patch clamp shape definition", | ||
| "nodeKind": "sh:BlankNodeOrIRI", | ||
| "targetClass": "nsg:PatchClamp", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/activity/v0.1.4/shapes/ActivityShape" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } |
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...periment/src/main/resources/schemas/neurosciencegraph/experiment/transfection/v0.1.0.json
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| { | ||
| "@context": [ | ||
| "{{base}}/contexts/neurosciencegraph/core/schema/v0.1.0", | ||
| { | ||
| "this": "{{base}}/schemas/neurosciencegraph/experiment/transfection/v0.1.0/shapes/" | ||
| } | ||
| ], | ||
| "imports": [ | ||
| "{{base}}/schemas/neurosciencegraph/commons/activity/v0.1.4" | ||
|
|
||
| ], | ||
| "@type": "nxv:Schema", | ||
| "shapes": [ | ||
| { | ||
| "@id": "this:TransfectionShape", | ||
| "@type": "sh:NodeShape", | ||
| "label": "Transfection shape definition", | ||
| "nodeKind": "sh:BlankNodeOrIRI", | ||
| "targetClass": "nsg:Transfection", | ||
| "and": [ | ||
| { | ||
| "node": "{{base}}/schemas/neurosciencegraph/commons/activity/v0.1.4/shapes/ActivityShape" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } |
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provpatterns/assets/ion-channel-trace-recording-prov-template.svg
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