Fix check_doi #92
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| name: pytest | |
| on: [push, pull_request] | |
| jobs: | |
| pytest: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| mock: [true, false] | |
| python-version: ['3.8', '3.11'] | |
| services: | |
| postgres: | |
| image: postgres:latest | |
| env: | |
| POSTGRES_PASSWORD: postgres_password | |
| ports: | |
| - 5432:5432 | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up ssh | |
| run: | | |
| ssh-keygen -t rsa -f ~/.ssh/id_rsa -N "" -C "" -q | |
| cat ~/.ssh/id_rsa.pub >> ~/.ssh/authorized_keys | |
| ssh-keyscan -t rsa localhost >> ~/.ssh/known_hosts | |
| ssh localhost | |
| - name: Install package | |
| run: | | |
| python3 -m pip install --upgrade pip setuptools | |
| python3 -m pip install coveralls | |
| python3 -m pip install -e . | |
| python3 -m pip install -e .[pytest] | |
| - name: Prepare database | |
| run: | | |
| psql postgres://postgres:postgres_password@localhost -c 'CREATE DATABASE test_isimip_metadata;' | |
| psql postgres://postgres:postgres_password@localhost/test_isimip_metadata -c 'CREATE EXTENSION pg_trgm;' | |
| - name: Setup environment file | |
| run: | | |
| echo "LOG_LEVEL=DEBUG" >> $GITHUB_ENV | |
| echo "LOG_FILE=isimip-publisher.log" >> $GITHUB_ENV | |
| echo "REMOTE_DEST=localhost" >> $GITHUB_ENV | |
| echo "REMOTE_DIR=${GITHUB_WORKSPACE}/testing/remote/" >> $GITHUB_ENV | |
| echo "LOCAL_DIR=${GITHUB_WORKSPACE}/testing/local/" >> $GITHUB_ENV | |
| echo "PUBLIC_DIR=${GITHUB_WORKSPACE}/testing/public/" >> $GITHUB_ENV | |
| echo "ARCHIVE_DIR=${GITHUB_WORKSPACE}/testing/archive/" >> $GITHUB_ENV | |
| echo "DATABASE=postgresql+psycopg2://postgres:postgres_password@localhost/test_isimip_metadata" >> $GITHUB_ENV | |
| echo "PROTOCOL_LOCATIONS=${GITHUB_WORKSPACE}/testing/protocol/" >> $GITHUB_ENV | |
| echo "ISIMIP_DATA_URL=http://localhost:8000/" >> $GITHUB_ENV | |
| echo "MOCK=${{ matrix.mock }}" >> $GITHUB_ENV | |
| - name: Run pytest | |
| run: | | |
| pytest --cov=isimip_publisher | |
| coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
| COVERALLS_PARALLEL: true | |
| coveralls: | |
| needs: pytest | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Run coveralls finish | |
| run: | | |
| pip install coveralls | |
| coveralls --service=github --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |