SLAP REST API

Codebase for the SLAP REST API, normally deployed via Apache HTTPD as originally on cheminfov.informatics.indiana.edu. The SLAP REST API is a central component in SLAP, used by the web app, command line tools, and directly via HTTP clients.

Files:

File	Usage	Comments	Runtime, Pre-processing, or Other
.htaccess	Apache config, associates handlers with filetypes.		Runtime
catalog.py
convertName2CID.py
drug_sim.R
fileupload.html
findPath_m		Compiled exe (source missing).	Runtime
generalSearch_test1.py
generalSearch_test2.py
makePairs.R			Pre-processing
odbc6.py	API	imported by prediction1.py	Runtime
pathfinder_m		Compiled exe (source missing), apparently obsoleted by pathfinder_m.py
pathfinder_m.py
pathfinder_rank1_backup.py
pathfinder_rank2_backup.py
pathfinder_rank3_backup.py
pathfinder_rank5.py	API	imported by prediction1.py	Runtime
pathfinder_rank_advanced.py
pathfinder_rank_backup.py
pathfinder_rank_backup_R.py
ppDrugTargetPrediction1.py	API	imported by prediction1.py	Runtime
ppPairPrediction2.py	API	imported by prediction1.py	Runtime
ppPairPrediction_local.py
prediction1.py	API	Top level called via .htaccess SetHandler mod_python PythonHandler prediction1.	Runtime
prediction2_backup.py
PreProcess		Compiled exe (source missing).	Pre-processing? or obsolete?
save_file.py			Other
sbv.py
sendEmail.py			Other
stats.R
sum_primes.py
test.py			Other

Dependencies:

• R? (Or did I replace this?)
• Python (v 2.7+?)
• Python pkg: [ ] msvcrt (only in save\_file.py)
• Python pkg: [X] operator
• Python pkg: [X] parse
• Python pkg: [X] pp
• Python pkg: [X] profile
• Python pkg: [X] psycopg2
• Python pkg: [ ] rpy2 (Not needed due to revision to solve 2014 outage.)
• Python pkg: [X] simplejson
• Python pkg: [ ] smtplib (only in sendEmail.py)
• Python pkg: [X] SOAPpy
• Python pkg: [X] SPARQLWrapper
• Python pkg: [X] xml.dom.minidom

Schematic diagrams

See also

• SLAP Dependencies
• SLAP Troubleshooting
• SLAP SQL