Code

Refactor analysis module functions#161

Code

Merged

tomjholland merged 62 commits intomainImperialCollegeLondon/PyProBE:mainfrom refactor-dma-analysis-codeImperialCollegeLondon/PyProBE:refactor-dma-analysis-codeCopy head branch name to clipboardNov 18, 2024

+3,694-949

Commits

Commits on Nov 1, 2024

• Add generic interpolator classes to analysis utils

  tomjholland

  committed
  c281ab1

• Add method to provide OCP data to DMA class

  tomjholland

  committed
  20c56df

• Full cell OCV estimation w composite electrode

  mohammedasher

  committed
  c8fa9ba

Commits on Nov 2, 2024

• Replace pydantic validation for interpolator with utility func, adapt linear interpolator as PPoly

  tomjholland

  committed
  b4c8e44

• Add interpolation-free methods for calculating OCV and its gradient

  tomjholland

  committed
  419d9cd

Commits on Nov 4, 2024

• Add support for sympy OCP expressions and add methods for differentiation

  tomjholland

  committed
  3b33624

• Rearrange order in DMA class

  tomjholland

  committed
  405185e

• Add method for running ocv fitting with new refactored methods

  tomjholland

  committed
  0dae32d

• Replace interpolators dict with separately defined functions

  tomjholland

  committed
  2d9a020

• Move interpolation functions into smoothing module

  tomjholland

  committed
  0d37c10

• Add new logic for downsampling data

  tomjholland

  committed
  3121e06

Commits on Nov 5, 2024

• Add downsampling tests for non-monotonic data

  tomjholland

  committed
  52e2bad

• Add downsampling utility function to DMA class

  tomjholland

  committed
  cab0222

• Add benchmarks to downsampling test

  tomjholland

  committed
  4155b8d

Commits on Nov 6, 2024

• Add methods for extending the data stored in result objects and joining new columns

  tomjholland

  committed
  5baf077

Commits on Nov 7, 2024

• Add class and methods for batch dma fitting

  tomjholland

  committed
  326169e

Commits on Nov 8, 2024

• Merge branch 'refactor-dma-analysis-code' into main

  tomjholland

  authored
  ab8af8d

• docs(contributor): contrib-readme-action has updated readme

  github-actions[bot]

  authored
  70da06d

• Merge pull request #160 from mohammedasher/main

  Show description for 2c95b41
  tomjholland

  authored
  2c95b41

• provide ocp functions to method for calculating full cell OCV

  tomjholland

  committed
  d6eb7a8

Commits on Nov 9, 2024

• Switch setting ocp data into adding ocp data to list

  tomjholland

  committed
  2cba16f

• Add numerical calculation of derivative on pure python functions

  tomjholland

  committed
  89b4dcf

• Create factory method for objective function to allow for flexibility to composite electrode

  tomjholland

  committed
  0cec7c1

Commits on Nov 11, 2024

• Add an OCP class for dealing with half cell data

  tomjholland

  committed
  a33a3ba

• Integrate new OCP classes into DMA methods

  tomjholland

  committed
  23a9942

• Add a CompositeOCP class

  tomjholland

  committed
  ed8dd47

• Reinstate logic for composite ocp fitting

  tomjholland

  committed
  f7225b7

• Fix tests for calculate_dma_parameters and downsample_ocv methods

  tomjholland

  committed
  68ecc9e

• BREAKING: remove fit_ocv method

  tomjholland

  committed
  f94d79c

• Fix tests for batch DMA

  tomjholland

  committed
  d11b7e6

• Fix tests for averaging input ocvs

  tomjholland

  committed
  df4d496

Commits on Nov 12, 2024

• Create ocp abstract class

  tomjholland

  committed
  ec00a6c

• Remove type descriptions from docstrings as auto generated in sphinx

  tomjholland

  committed
  15e1c7d

• Create new resistance correction class and add average dma to it

  tomjholland

  committed
  15a12a9

• Remove DMA class, module just holds methods

  tomjholland

  committed
  03601de

• Add validate_call decorators to public functions

  tomjholland

  committed
  3469647

• Remove type checking from functionality of AnalysisValidator

  tomjholland

  committed
  0edc07e

• Remove print statement

  tomjholland

  committed
  132e671

• Add method for extracting only ocv points from pulsing

  tomjholland

  committed
  e1619ed

• Switch to ray for parallel processing

  tomjholland

  committed
  04063e5

• Update ocv-fitting example notebook for refactored dma module

  tomjholland

  committed
  b015f83

Commits on Nov 13, 2024

• Report ray parallel performance and ensure shutdown

  tomjholland

  committed
  36e7a24

• Include stoichiometry limits in result of quantify degradation modes

  tomjholland

  committed
  f76e6af

• Allow kwargs to pass to interpolators

  tomjholland

  committed
  9a2ab5c

• Add tests for clean copy

  tomjholland

  committed
  bee0f9e

Commits on Nov 15, 2024

• Add kwargs to linear interpolator

  tomjholland

  committed
  d0179c7

• Rename test_dma to test_degradation_mode_analysis

  tomjholland

  committed
  8871b96

• Add dma method for sequentially performing the ocv fitting

  tomjholland

  committed
  4e71545

• Add deprecated type stubs

  tomjholland

  committed
  e280234

• Add standalone method for getting resistances from each pulse

  tomjholland

  committed
  89b06ae

• Move smoothing methods into separate functions and fix downsample logic

  tomjholland

  committed
  7c8a646

• Remove time column argument from downsampling

  tomjholland

  committed
  cc76d69

Commits on Nov 17, 2024

• Move cycling methods out of class

  tomjholland

  committed
  9471496

• Move differentiation methods out of class

  tomjholland

  committed
  db76030

• Update example notebooks for changes to analysis module

  tomjholland

  committed
  25c66a1

• Add method for non-monotonic smoothing to downsample

  tomjholland

  committed
  1287c50

• Add method validation to smoothing module and deprecate old methods

  tomjholland

  committed
  b4453d1

Commits on Nov 18, 2024

• Add deprecated package to requirements

  tomjholland

  committed
  37f1af2

• Add validate_call decorators to analysis functions

  tomjholland

  committed
  566f911

• Minor reorganisation and docstring updates

  tomjholland

  committed
  a0a27d0

• Update docs and examples for refactored analysis module

  tomjholland

  committed
  6e73b84

• Fix error with r_time provided as int to get_resistances method

  tomjholland

  committed
  6d9c501