ENH: append properties instead of overwrite in HDF5 #1974
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hjmjohnson
approved these changes
Sep 7, 2020
|
This seems reasonable, but a bit more explanation would be helpful. |
|
@dzenanz Do you still think this should be merged? |
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I would like @thewtex to review it, but if he doesn't in the next few days then let's merge. |
phcerdan
pushed a commit
to phcerdan/ITK
that referenced
this pull request
Dec 8, 2020
Run the UpdateFromUpstream.sh script to extract upstream Eigen3
using the following shell commands.
$ git archive --prefix=upstream-eigen3/ b51eab5c --
Eigen/Cholesky
Eigen/CholmodSupport
Eigen/CMakeLists.txt
Eigen/Core
Eigen/Dense
Eigen/Eigen
Eigen/Eigenvalues
Eigen/Geometry
Eigen/Householder
Eigen/IterativeLinearSolvers
Eigen/Jacobi
Eigen/LU
Eigen/MetisSupport
Eigen/OrderingMethods
Eigen/PardisoSupport
Eigen/PaStiXSupport
Eigen/QR
Eigen/QtAlignedMalloc
Eigen/Sparse
Eigen/SparseCholesky
Eigen/SparseCore
Eigen/SparseLU
Eigen/SparseQR
Eigen/SPQRSupport
Eigen/StdDeque
Eigen/StdList
Eigen/StdVector
Eigen/SuperLUSupport
Eigen/SVD
Eigen/UmfPackSupport
Eigen/src
COPYING.BSD
COPYING.MINPACK
COPYING.MPL2
COPYING.README
README.md
README.kitware.md
CMakeLists.txt
cmake/FindStandardMathLibrary.cmake
cmake/Eigen3Config.cmake.in
.gitattributes
| tar x
$ git shortlog --perl-regexp --author='^((?!Kitware Robot).*)$' --no-merges --abbrev=8 --format='%h %s' 0a5604a9..b51eab5c
Alexander Grund (1):
1b080fdc Make relative path variables of type STRING
Ben Boeckel (1):
8c652058 git: remove executable permissions from header files
Christoph Hertzberg (6):
84364ad1 Bug InsightSoftwareConsortium#1788: Fix rule-of-three violations inside the stable modules. This fixes deprecated-copy warnings when compiling with GCC>=9 Also protect some additional Base-constructors from getting called by user code code (InsightSoftwareConsortium#1587)
14db78c5 Fix some maybe-uninitialized warnings
3620371c Bug InsightSoftwareConsortium#2036 make sure find_standard_math_library_test_program actually compiles (and is guaranteed to call math functions)
ac632f66 bug InsightSoftwareConsortium#1746: Removed implementation of standard copy-constructor and standard copy-assign-operator from PermutationMatrix and Transpositions to allow malloc-less std::move. Added unit-test to rvalue_types
54930b6b Remove unused variable
2a4fcb2c Fix doxygen class block that was wrongly named.
David Tellenbach (9):
abb5d04c Fix StlDeque for GCC 10
76f06505 Bump to 3.3.8-rc1
b933946d Fix failure in GEBP kernel when compiling with OpenMP and FMA
9f202c6f Fix undefined behaviour caused by uncaught exceptions in OMP section
dc252fbf Bump to 3.3.8
7a0a2a50 Define coeff-wise binary array operators for base class
75f8b06e Mention problems when using potentially throwing scalars and OpenMP
5dda502f Rename test/array.cpp to test/array_cwise.cpp
0fd6b4f7 Bump to 3.3.9
Eugene Zhulenev (2):
160c0a34 Change typedefs from private to protected to fix MSVC compilation
b51eab5c Fix shadow warnings in AlignedBox and SparseBlock
Florian Maurin (1):
52207cf6 Fix typo in doc
Gael Guennebaud (11):
1595ee40 Add missing footer declaration
86306a5c remove piwik tracker
16ed93cf add a banner to advertise the survey
e5b35d64 Fix compilation with AVX512
def70b2e Fix compilation with AVX512 and AVX/SSE packet-math functions
efd72cdd Backport AVX512 implementation from devel branch to 3.3 (the 3.3 version had many issues)
94f66fc3 Fix InsightSoftwareConsortium#1974: assertion when reserving an empty sparse matrix
b343bace Relaxed fastmath unit test: if std::foo fails, then let's only trigger a warning is numext::foo fails too. A true error will triggered only if std::foo works but our numext::foo fails.
89a86ed4 fix InsightSoftwareConsortium#1901: warning in Mode==(Upper|Lower)
a796be81 relax number of iterations checks to avoid false negatives
590aec8f check two ctors
Janek Kozicki (1):
0dd9643a Fix Yade high precision Real compilation
Jim Lersch (1):
0c26611d Workaround for doxygen class template titles in which the template part of the class signature is lost due to a problem with forward declarations. The problem is probably caused by doxygen bug #7689. It is confirmed to be fixed in doxygen >= 1.8.19.
Karl Ljungkvist (1):
e91e5d8c Fix typo in Tutorial_BlockOperations_block_assignment.cpp
Luke Peterson (1):
ef3cc72c Remove error counting in OpenMP parallelize_gemm
Martin Vonheim Larsen (1):
4e5385c9 Enable MathJax in Doxygen.in
Pablo Hernandez-Cerdan (2):
5d2d394d Add .gitattributes to ignore UpdateFromStream content checks
93d0c52c CMake: Overrides upstream Eigen3 CMakeLists.txt
Rasmus Munk Larsen (1):
02ef3802 Fix incorrect use of std::abs reported in InsightSoftwareConsortium#1823.
Simon Pfreundschuh (1):
e22d0947 Replaced call to deprecated 'load' function with appropriate call to 'on'.
Tobias Bosch (1):
f55a6d05 Include <sstream> explicitly, and don't rely on the implicit include via <complex>.
nluehr (1):
4707c3aa Fix incorrect integer cast in predux<half2>().
szczepaniak bartek (1):
bfdd4a99 Fix Paradiso.
Change-Id: Ib1f461c42dae13af5f65552ac1a192e96688f2d9
phcerdan
added a commit
to phcerdan/ITK
that referenced
this pull request
Dec 8, 2020
Changes from last update:
```
git shortlog --no-merges 89449a0821676c5af96cc51973de^..0fd6b4f71dd85b20 | cat
```
```
Alexander Grund (1):
Make relative path variables of type STRING
Christoph Hertzberg (7):
Remove .hgignore and copy .gitignore from master branch
Bug InsightSoftwareConsortium#1788: Fix rule-of-three violations inside the stable modules. This fixes deprecated-copy warnings when compiling with GCC>=9 Also protect some additional Base-constructors from getting called by user code code (InsightSoftwareConsortium#1587)
Fix some maybe-uninitialized warnings
Bug InsightSoftwareConsortium#2036 make sure find_standard_math_library_test_program actually compiles (and is guaranteed to call math functions)
bug InsightSoftwareConsortium#1746: Removed implementation of standard copy-constructor and standard copy-assign-operator from PermutationMatrix and Transpositions to allow malloc-less std::move. Added unit-test to rvalue_types
Remove unused variable
Fix doxygen class block that was wrongly named.
David Tellenbach (9):
Fix StlDeque for GCC 10
Bump to 3.3.8-rc1
Fix failure in GEBP kernel when compiling with OpenMP and FMA
Fix undefined behaviour caused by uncaught exceptions in OMP section
Bump to 3.3.8
Define coeff-wise binary array operators for base class
Mention problems when using potentially throwing scalars and OpenMP
Rename test/array.cpp to test/array_cwise.cpp
Bump to 3.3.9
Eugene Zhulenev (1):
Change typedefs from private to protected to fix MSVC compilation
Florian Maurin (1):
Fix typo in doc
Gael Guennebaud (11):
Add missing footer declaration
remove piwik tracker
add a banner to advertise the survey
Fix compilation with AVX512
Fix compilation with AVX512 and AVX/SSE packet-math functions
Backport AVX512 implementation from devel branch to 3.3 (the 3.3 version had many issues)
Fix InsightSoftwareConsortium#1974: assertion when reserving an empty sparse matrix
Relaxed fastmath unit test: if std::foo fails, then let's only trigger a warning is numext::foo fails too. A true error will triggered only if std::foo works but our numext::foo fails.
fix InsightSoftwareConsortium#1901: warning in Mode==(Upper|Lower)
relax number of iterations checks to avoid false negatives
check two ctors
Janek Kozicki (1):
Fix Yade high precision Real compilation
Jim Lersch (1):
Workaround for doxygen class template titles in which the template part of the class signature is lost due to a problem with forward declarations. The problem is probably caused by doxygen bug #7689. It is confirmed to be fixed in doxygen >= 1.8.19.
Karl Ljungkvist (1):
Fix typo in Tutorial_BlockOperations_block_assignment.cpp
Luke Peterson (1):
Remove error counting in OpenMP parallelize_gemm
Martin Vonheim Larsen (1):
Enable MathJax in Doxygen.in
Rasmus Munk Larsen (1):
Fix incorrect use of std::abs reported in InsightSoftwareConsortium#1823.
Simon Pfreundschuh (1):
Replaced call to deprecated 'load' function with appropriate call to 'on'.
Tobias Bosch (1):
Include <sstream> explicitly, and don't rely on the implicit include via <complex>.
nluehr (1):
Fix incorrect integer cast in predux<half2>().
szczepaniak bartek (1):
Fix Paradiso.
```
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This does not make a difference wrt #1971 on my computer.