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Update README.md
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vasimuddin authored Sep 4, 2024
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Expand Up @@ -28,7 +28,7 @@ Setup \<inputdir\>/config.yaml (described below) with appropriate values
### Docker run:
```
docker load -i fq2bam.tar ## optional, if the image is build on the same machine or is already loaded
docker run -v <inputdir>:/input <outdir>:/out <refdir>:/refdir <tempdir>:/tempdir fq2bam:latest bash run_bwa.sh sortedbam /input/config.yaml
docker run -v <inputdir>:/input -v <outdir>:/out -v <refdir>:/refdir -v <tempdir>:/tempdir fq2bam:latest bash run_bwa.sh sortedbam /input/config.yaml
```
Note:
\<inputdir\>: Location of the local directory containing read files read1 & read2
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