Add graal info to module file (#6010)

* Update citeproc-java to 2.1.0-SNAPSHOT and enable experimental pure-Java mode

* Add graal info to module file

* Update module-info.java

* fix loading of CSL styles using correct path

* use acm stlye as default

* disbale debug mode

* add changelog entry

Co-authored-by: Michel Krämer <michel@undercouch.de>
Co-authored-by: Christoph <cschwentker@gmail.com>

CHANGELOG.md

@@ -46,6 +46,7 @@ We refer to [GitHub issues](https://github.com/JabRef/jabref/issues) by using `#
 - We fixed an issue where changing entry type doesn't always work when biblatex source is shown. [#5905](https://github.com/JabRef/jabref/issues/5905)
 - We fixed an issue where the group and the link column were not updated after changing the entry in the main table. [#5985](https://github.com/JabRef/jabref/issues/5985)
 - We fixed an issue where reordering the groups was not possible after inserting an article. [#6008](https://github.com/JabRef/jabref/issues/6008)
+- We fixed an issue where citation styles except the default "Preview" could not be used. [#56220](https://github.com/JabRef/jabref/issues/5622)
 
 ### Removed
 

build.gradle

@@ -181,7 +181,7 @@ dependencies {
     implementation group: 'org.apache.logging.log4j', name: 'log4j-core', version: '3.0.0-SNAPSHOT'
     annotationProcessor group: 'org.apache.logging.log4j', name: 'log4j-core', version: '3.0.0-SNAPSHOT'
 
-    implementation 'de.undercouch:citeproc-java:2.0.0'
+    implementation 'de.undercouch:citeproc-java:2.1.0-SNAPSHOT'
 
     implementation group: 'jakarta.activation', name: 'jakarta.activation-api', version: '1.2.1'
     implementation group: 'jakarta.xml.bind', name: 'jakarta.xml.bind-api', version: '2.3.2'
@@ -546,7 +546,7 @@ task deleteInstallerTemp(type: Delete) {
 
 jpackage.dependsOn deleteInstallerTemp
 jlink {
-    options = ['--strip-debug', '--compress', '2', '--no-header-files', '--no-man-pages']
+    options = ['--strip-debug','--compress', '2', '--no-header-files', '--no-man-pages']
     launcher {
         name = 'JabRef'
     }

src/main/java/module-info.java

@@ -61,7 +61,11 @@
     requires jbibtex;
     requires citeproc.java;
     requires antlr.runtime;
-    requires org.graalvm.js;
+    requires org.graalvm.truffle;
+    requires org.graalvm.sdk;
+    requires transitive org.graalvm.js;
+    requires java.scripting;
+    requires jdk.internal.vm.compiler;
     requires org.apache.xmpbox;
     requires de.saxsys.mvvmfx.validation;
     requires com.google.gson;

src/main/java/org/jabref/logic/citationstyle/CSLAdapter.java

@@ -14,6 +14,7 @@
 import org.jabref.model.strings.LatexToUnicodeAdapter;
 
 import de.undercouch.citeproc.CSL;
+import de.undercouch.citeproc.DefaultAbbreviationProvider;
 import de.undercouch.citeproc.ItemDataProvider;
 import de.undercouch.citeproc.bibtex.BibTeXConverter;
 import de.undercouch.citeproc.csl.CSLItemData;
@@ -66,7 +67,8 @@ public synchronized List<String> makeBibliography(List<BibEntry> bibEntries, Str
     private void initialize(String newStyle, CitationStyleOutputFormat newFormat) throws IOException {
         if ((cslInstance == null) || !Objects.equals(newStyle, style)) {
             // lang and forceLang are set to the default values of other CSL constructors
-            cslInstance = new CSL(dataProvider, new JabRefLocaleProvider(), newStyle, "en-US", false);
+            cslInstance = new CSL(dataProvider, new JabRefLocaleProvider(),
+                  new DefaultAbbreviationProvider(), null, newStyle, "en-US", false, true);
             style = newStyle;
         }
 

src/main/java/org/jabref/logic/citationstyle/CitationStyle.java

@@ -6,9 +6,6 @@
 import java.net.URISyntaxException;
 import java.net.URL;
 import java.nio.charset.StandardCharsets;
-import java.nio.file.FileSystem;
-import java.nio.file.FileSystemAlreadyExistsException;
-import java.nio.file.FileSystems;
 import java.nio.file.Files;
 import java.nio.file.NoSuchFileException;
 import java.nio.file.Path;
@@ -25,6 +22,7 @@
 import javax.xml.parsers.DocumentBuilderFactory;
 import javax.xml.parsers.ParserConfigurationException;
 
+import org.jabref.JabRefMain;
 import org.jabref.logic.util.StandardFileType;
 
 import de.undercouch.citeproc.helper.CSLUtils;
@@ -138,28 +136,18 @@ public static List<CitationStyle> discoverCitationStyles() {
             return STYLES;
         }
 
-        URL url = CitationStyle.class.getResource(STYLES_ROOT);
-        if (url == null) {
-            return Collections.emptyList();
-        }
+        URL url = JabRefMain.class.getResource(STYLES_ROOT + "/acm-siggraph.csl");
+        Objects.requireNonNull(url);
+
         try {
             URI uri = url.toURI();
-            if ("jar".equals(uri.getScheme())) {
-                try (FileSystem fs = FileSystems.newFileSystem(uri, Collections.emptyMap())) {
-                    Path path = fs.getPath(STYLES_ROOT);
-                    STYLES.addAll(discoverCitationStylesInPath(path));
-                } catch (FileSystemAlreadyExistsException e) {
-                    try (FileSystem fs = FileSystems.getFileSystem(uri)) {
-                        Path path = fs.getPath(STYLES_ROOT);
-                        STYLES.addAll(discoverCitationStylesInPath(path));
-                    }
-                }
-            } else {
-                STYLES.addAll(discoverCitationStylesInPath(Paths.get(uri)));
-            }
+            Path path = Path.of(uri).getParent();
+
+            STYLES.addAll(discoverCitationStylesInPath(path));
+
             return STYLES;
         } catch (URISyntaxException | IOException e) {
-            LOGGER.error("something went wrong while searching available CitationStyles. Are you running directly from source code?", e);
+            LOGGER.error("something went wrong while searching available CitationStyles", e);
             return Collections.emptyList();
         }
     }