Converts integrity check dialog to JavaFX (#4559)

* Converts integrity check dialog to JavaFX

Moreover:
- Show entry by reference and not by id. Fixes #2181.
- Fixes a few issues that occurred when opening the entry editor by code from the integrity dialog
- Reuse gridpane in entry editor (should have a slightly superior performance)
- Improve display of progress dialog
- Invoke copy files task using central task executor

* fix l10n
fix aborting of copy files task and showing of integrity check dialog

* fix l10n

src/main/java/org/jabref/gui/BasePanel.java

@@ -19,6 +19,7 @@
 import javax.swing.undo.CannotRedoException;
 import javax.swing.undo.CannotUndoException;
 
+import javafx.application.Platform;
 import javafx.beans.binding.Bindings;
 import javafx.geometry.Orientation;
 import javafx.scene.Node;
@@ -693,11 +694,12 @@ public void insertEntry(final BibEntry bibEntry) {
         }
     }
 
-    public void editEntryByIdAndFocusField(final String entryId, final String fieldName) {
-        bibDatabaseContext.getDatabase().getEntryById(entryId).ifPresent(entry -> {
-            clearAndSelect(entry);
-            showAndEdit(entry);
+    public void editEntryAndFocusField(BibEntry entry, String fieldName) {
+        showAndEdit(entry);
+        Platform.runLater(() -> {
+            // Focus field and entry in main table (async to give entry editor time to load)
             entryEditor.setFocusToField(fieldName);
+            clearAndSelect(entry);
         });
     }
 

src/main/java/org/jabref/gui/DialogService.java

@@ -183,9 +183,11 @@ Optional<ButtonType> showCustomButtonDialogAndWait(Alert.AlertType type, String
     /**
      * Constructs and shows a canceable {@link ProgressDialog}. Clicking cancel will cancel the underlying service and close the dialog
      *
+     * @param title title of the dialog
+     * @param content message to show above the progress bar
      * @param task The {@link Task} which executes the work and for which to show the dialog
      */
-    <V> void showCanceableProgressDialogAndWait(Task<V> task);
+    <V> void showProgressDialogAndWait(String title, String content, Task<V> task);
 
     /**
      * Notify the user in an non-blocking way (i.e., in form of toast in a snackbar).

src/main/java/org/jabref/gui/FXDialogService.java

@@ -24,9 +24,11 @@
 import javafx.scene.layout.Region;
 import javafx.stage.DirectoryChooser;
 import javafx.stage.FileChooser;
+import javafx.stage.Stage;
 import javafx.stage.Window;
 
 import org.jabref.JabRefGUI;
+import org.jabref.gui.icon.IconTheme;
 import org.jabref.gui.util.DirectoryDialogConfiguration;
 import org.jabref.gui.util.FileDialogConfiguration;
 import org.jabref.logic.l10n.Localization;
@@ -226,8 +228,13 @@ public <R> Optional<R> showCustomDialogAndWait(Dialog<R> dialog) {
     }
 
     @Override
-    public <V> void showCanceableProgressDialogAndWait(Task<V> task) {
+    public <V> void showProgressDialogAndWait(String title, String content, Task<V> task) {
         ProgressDialog progressDialog = new ProgressDialog(task);
+        progressDialog.setHeaderText(null);
+        progressDialog.setTitle(title);
+        progressDialog.setContentText(content);
+        progressDialog.setGraphic(null);
+        ((Stage) progressDialog.getDialogPane().getScene().getWindow()).getIcons().add(IconTheme.getJabRefImageFX());
         progressDialog.setOnCloseRequest(evt -> task.cancel());
         DialogPane dialogPane = progressDialog.getDialogPane();
         dialogPane.getButtonTypes().add(ButtonType.CANCEL);

src/main/java/org/jabref/gui/JabRefFrame.java

@@ -62,7 +62,6 @@
 import org.jabref.gui.actions.DatabasePropertiesAction;
 import org.jabref.gui.actions.EditExternalFileTypesAction;
 import org.jabref.gui.actions.ErrorConsoleAction;
-import org.jabref.gui.actions.IntegrityCheckAction;
 import org.jabref.gui.actions.LookupIdentifierAction;
 import org.jabref.gui.actions.ManageCustomExportsAction;
 import org.jabref.gui.actions.ManageCustomImportsAction;
@@ -94,6 +93,7 @@
 import org.jabref.gui.importer.ImportCommand;
 import org.jabref.gui.importer.ImportInspectionDialog;
 import org.jabref.gui.importer.actions.OpenDatabaseAction;
+import org.jabref.gui.integrity.IntegrityCheckAction;
 import org.jabref.gui.keyboard.KeyBinding;
 import org.jabref.gui.menus.FileHistoryMenu;
 import org.jabref.gui.mergeentries.MergeEntriesAction;

src/main/java/org/jabref/gui/actions/CopyFilesAction.java

@@ -32,16 +32,6 @@ public CopyFilesAction(JabRefFrame frame) {
         this.dialogService = frame.getDialogService();
     }
 
-    private void startServiceAndshowProgessDialog(Task<List<CopyFilesResultItemViewModel>> exportService) {
-
-        dialogService.showCanceableProgressDialogAndWait(exportService);
-
-        exportService.run();
-        exportService.setOnSucceeded((e) -> {
-            showDialog(exportService.getValue());
-        });
-    }
-
     private void showDialog(List<CopyFilesResultItemViewModel> data) {
         if (data.isEmpty()) {
             dialogService.showInformationDialogAndWait(Localization.lang("Copy linked files to folder..."), Localization.lang("No linked files found for export."));
@@ -64,7 +54,12 @@ public void execute() {
             databaseContext = frame.getCurrentBasePanel().getBibDatabaseContext();
 
             Task<List<CopyFilesResultItemViewModel>> exportTask = new CopyFilesTask(databaseContext, entries, path);
-            startServiceAndshowProgessDialog(exportTask);
+            dialogService.showProgressDialogAndWait(
+                    Localization.lang("Copy linked files to folder..."),
+                    Localization.lang("Copy linked files to folder..."),
+                    exportTask);
+            Globals.TASK_EXECUTOR.execute(exportTask);
+            exportTask.setOnSucceeded((e) -> showDialog(exportTask.getValue()));
         });
 
     }

src/main/java/org/jabref/gui/copyfiles/CopyFilesTask.java

@@ -67,9 +67,18 @@ protected List<CopyFilesResultItemViewModel> call() throws InterruptedException,
 
             for (int i = 0; i < entries.size(); i++) {
 
+                if (isCancelled()) {
+                    break;
+                }
+
                 List<LinkedFile> files = entries.get(i).getFiles();
 
                 for (int j = 0; j < files.size(); j++) {
+
+                    if (isCancelled()) {
+                        break;
+                    }
+
                     updateMessage(Localization.lang("Copying file %0 of entry %1", Integer.toString(j + 1), Integer.toString(i + 1)));
 
                     LinkedFile fileName = files.get(j);
@@ -78,14 +87,18 @@ protected List<CopyFilesResultItemViewModel> call() throws InterruptedException,
 
                     newPath = OptionalUtil.combine(Optional.of(exportPath), fileToExport, resolvePathFilename);
 
-                    newPath.ifPresent(newFile -> {
+                    if (newPath.isPresent()) {
+
+                        Path newFile = newPath.get();
                         boolean success = FileUtil.copyFile(fileToExport.get(), newFile, false);
                         updateProgress(totalFilesCounter++, totalFilesCount);
                         try {
                             Thread.sleep(300);
                         } catch (InterruptedException e) {
-                            // TODO Auto-generated catch block
-                            e.printStackTrace();
+                            if (isCancelled()) {
+                                updateMessage("Cancelled");
+                                break;
+                            }
                         }
                         if (success) {
                             updateMessage(localizedSucessMessage);
@@ -99,7 +112,9 @@ protected List<CopyFilesResultItemViewModel> call() throws InterruptedException,
                             writeLogMessage(newFile, bw, localizedErrorMessage);
                             addResultToList(newFile, success, localizedErrorMessage);
                         }
-                    });
+
+                    }
+
                 }
             }
             updateMessage(Localization.lang("Finished copying"));