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Selecting an entry InProceedings causes an uncaught exception #9503

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mlep opened this issue Dec 26, 2022 · 2 comments · Fixed by #9504
Closed
2 tasks done

Selecting an entry InProceedings causes an uncaught exception #9503

mlep opened this issue Dec 26, 2022 · 2 comments · Fixed by #9504
Milestone
v5.9

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@mlep
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mlep commented Dec 26, 2022

JabRef version

5.8 (latest release)

Operating system

Windows

Details on version and operating system

JabRef 6.0--2022-12-25--ed78e89 Linux 5.10.0-20-amd64 amd64 Java 18.0.2.1 JavaFX 19+11

Checked with the latest development build

  • I made a backup of my libraries before testing the latest development version.
  • I have tested the latest development version and the problem persists

Steps to reproduce the behaviour

  1. Open a library, such as https://github.com/JabRef/jabref/blob/main/src/test/resources/testbib/jabref-authors.bib
  2. Do a left click on an entry of type InProceedings (maybe a few of them)
    ==> an uncaught exception is raised:

java.util.regex.PatternSyntaxException: Illegal repetition near index 12
2015[\.\s]*{IEEE}[\.\s]*International[\.\s]*Conference[\.\s]*on[\.\s]*Digital[\.\s]*Signal[\.\s]*Processing,[\.\s]*{DSP}[\.\s]*2015,[\.\s]*Singapore,[\.\s]*July[\.\s]*21-24,[\.\s]*2015[\.\s]*
            ^
	at java.base/java.util.regex.Pattern.error(Unknown Source)
	at java.base/java.util.regex.Pattern.closure(Unknown Source)
	at java.base/java.util.regex.Pattern.sequence(Unknown Source)
	at java.base/java.util.regex.Pattern.expr(Unknown Source)
	at java.base/java.util.regex.Pattern.compile(Unknown Source)
	at java.base/java.util.regex.Pattern.<init>(Unknown Source)
	at java.base/java.util.regex.Pattern.compile(Unknown Source)
	at org.jabref@6.0.3185/org.jabref.logic.journals.JournalAbbreviationRepository.lambda$findDottedAbbrFromDotless$2(Unknown Source)
[...]

Appendix

...

Log File

Not updating theme because it hasn't changed
Theme set to Theme{type=DEFAULT, name=''} with base css StyleSheet{jrt:/org.jabref/org/jabref/gui/Base.css}
No open database detected
Ouverture en cours: '/home/user/Documents/Biblio/jabref-authors.bib'
Index path for /home/user/Documents/Biblio/jabref-authors.bib is /home/user/.local/share/JabRef/lucene94
Could not find geiger2016evolution.pdf
Could not find Geiger2016ProcessEngineBenchmarking.pdf
Could not find Nikol2016.pdf
Could not find Geiger2015BPMNConformanceIn.pdf
Could not find Harrer2015ImprovingStaticAnalysis.pdf
Could not find Harrer2014AutomatedandIsolated.pdf
Could not find Harrer2014BPELConformancein.pdf
Could not find Roeck2014PerformanceBenchmarkingBPEL.pdf
Could not find Harrer2014ProcessEngineSelection.pdf
Could not find Preissinger2014StaticAnalysisRules.pdf
Could not find Roeck2014TestingBPELEngine.pdf
Could not find Harrer2014TowardsRobustnessEvaluation.pdf
Could not find Kolb2014TowardsApplicationPortability.pdf
Could not find Preissinger2014BPELStaticAnalysisProposal.pdf
Could not find Harrer2014TowardsUniformBPEL.pdf
Could not find Geiger2013BPMN20Process.pdf
Could not find Geiger2013BPMN20Serialization.pdf
Could not find Geiger2013DetectingInteroperabilityand.pdf
Could not find Lenhard2013DetectingPortabilityIssues.pdf
Could not find Lenhard2013MeasuringInstallabilityService.pdf
Could not find Lenhard2013MeasuringPortabilityof.pdf
Could not find Harrer2013OpenSourceversus.pdf
Could not find Harrer2012BetsyBPELEngine.pdf
Could not find Harrer2012BPELconformancein.pdf
Could not find Kolb2012BridgingHeterogeneityOrchestrations.pdf
Could not find Geiger2011ProposalCheckingConformance.pdf
Could not find Lenhard2011EditDistanceBased.pdf
Could not find Schoenberger2011HasWSIs.pdf
Could not find Geiger2011TowardsAutomatedConformance.pdf
Could not find Benker2009.pdf
Uncaught exception occurred in Thread[JavaFX Application Thread,5,main]
java.util.regex.PatternSyntaxException: Illegal repetition near index 12
2015[.\s]*{IEEE}[.\s]*International[.\s]*Conference[.\s]*on[.\s]*Digital[.\s]*Signal[.\s]Processing,[.\s]{DSP}[.\s]*2015,[.\s]*Singapore,[.\s]*July[.\s]*21-24,[.\s]2015[.\s]
^
at java.base/java.util.regex.Pattern.error(Unknown Source)
at java.base/java.util.regex.Pattern.closure(Unknown Source)
at java.base/java.util.regex.Pattern.sequence(Unknown Source)
at java.base/java.util.regex.Pattern.expr(Unknown Source)
at java.base/java.util.regex.Pattern.compile(Unknown Source)
at java.base/java.util.regex.Pattern.(Unknown Source)
at java.base/java.util.regex.Pattern.compile(Unknown Source)
at org.jabref@6.0.3185/org.jabref.logic.journals.JournalAbbreviationRepository.lambda$findDottedAbbrFromDotless$2(Unknown Source)
at java.base/java.util.stream.ReferencePipeline$2$1.accept(Unknown Source)
at java.base/java.util.Iterator.forEachRemaining(Unknown Source)
at java.base/java.util.Spliterators$IteratorSpliterator.forEachRemaining(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.copyInto(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.wrapAndCopyInto(Unknown Source)
at java.base/java.util.stream.ReduceOps$ReduceOp.evaluateSequential(Unknown Source)
at java.base/java.util.stream.AbstractPipeline.evaluate(Unknown Source)
at java.base/java.util.stream.ReferencePipeline.collect(Unknown Source)
at org.jabref@6.0.3185/org.jabref.logic.journals.JournalAbbreviationRepository.findDottedAbbrFromDotless(Unknown Source)
at org.jabref@6.0.3185/org.jabref.logic.journals.JournalAbbreviationRepository.isAbbreviatedName(Unknown Source)
at org.jabref@6.0.3185/org.jabref.logic.integrity.AbbreviationChecker.checkValue(Unknown Source)
at org.jabref@6.0.3185/org.jabref.gui.fieldeditors.AbstractEditorViewModel.lambda$new$0(Unknown Source)
at org.jabref.merged.module@6.0.3185/de.saxsys.mvvmfx.utils.validation.FunctionBasedValidator.lambda$new$1(Unknown Source)
at org.jabref.merged.module@6.0.3185/de.saxsys.mvvmfx.utils.validation.FunctionBasedValidator.validate(Unknown Source)
at org.jabref.merged.module@6.0.3185/de.saxsys.mvvmfx.utils.validation.FunctionBasedValidator.lambda$new$0(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.binding.ExpressionHelper$Generic.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.binding.ExpressionHelper.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.beans.property.StringPropertyBase.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.beans.property.StringPropertyBase.markInvalid(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.beans.property.StringPropertyBase.set(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.beans.property.StringPropertyBase.set(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.beans.property.StringProperty.setValue(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.beans.property.StringProperty.setValue(Unknown Source)
at org.jabref@6.0.3185/org.jabref.gui.util.BindingsHelper.bindBidirectional(Unknown Source)
at org.jabref@6.0.3185/org.jabref.gui.util.BindingsHelper.bindBidirectional(Unknown Source)
at org.jabref@6.0.3185/org.jabref.gui.fieldeditors.AbstractEditorViewModel.bindToEntry(Unknown Source)
at org.jabref@6.0.3185/org.jabref.gui.fieldeditors.SimpleEditor.bindToEntry(Unknown Source)
at org.jabref@6.0.3185/org.jabref.gui.entryeditor.FieldsEditorTab.setupPanel(Unknown Source)
at org.jabref@6.0.3185/org.jabref.gui.entryeditor.FieldsEditorTab.bindToEntry(Unknown Source)
at org.jabref@6.0.3185/org.jabref.gui.entryeditor.EntryEditorTab.notifyAboutFocus(Unknown Source)
at org.jabref@6.0.3185/org.jabref.gui.entryeditor.EntryEditor.setEntry(Unknown Source)
at java.base/java.util.Optional.ifPresent(Unknown Source)
at org.jabref@6.0.3185/org.jabref.gui.LibraryTab.lambda$createMainTable$10(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.collections.ListListenerHelper$Generic.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.collections.ListListenerHelper.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.collections.ObservableListBase.fireChange(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.collections.ListChangeBuilder.commit(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.collections.ListChangeBuilder.endChange(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.collections.ObservableListBase.endChange(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.scene.control.SelectedItemsReadOnlyObservableList.lambda$new$0(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.collections.ListListenerHelper$Generic.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.collections.ListListenerHelper.fireValueChangedEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.collections.ObservableListBase.fireChange(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.collections.ListChangeBuilder.commit(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.collections.ListChangeBuilder.endChange(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.collections.ObservableListBase.endChange(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.scene.control.ReadOnlyUnbackedObservableList._endChange(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.scene.control.MultipleSelectionModelBase$SelectedIndicesList._endChange(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.scene.control.ControlUtils.updateSelectedIndices(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.scene.control.TableView$TableViewArrayListSelectionModel.fireCustomSelectedCellsListChangeEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.scene.control.TableView$TableViewArrayListSelectionModel.clearAndSelect(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.scene.control.TableView$TableViewSelectionModel.clearAndSelect(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.scene.control.behavior.TableCellBehaviorBase.simpleSelect(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.scene.control.behavior.TableCellBehaviorBase.doSelect(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.scene.control.behavior.CellBehaviorBase.mousePressed(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.scene.control.inputmap.InputMap.handle(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.CompositeEventHandler$NormalEventHandlerRecord.handleBubblingEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.event.Event.fireEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.scene.Scene$MouseHandler.process(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.scene.Scene.processMouseEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/javafx.scene.Scene$ScenePeerListener.mouseEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.tk.quantum.GlassViewEventHandler$MouseEventNotification.run(Unknown Source)
at java.base/java.security.AccessController.doPrivileged(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleMouseEvent$2(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.glass.ui.View.handleMouseEvent(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.glass.ui.View.notifyMouse(Unknown Source)
at org.jabref.merged.module@6.0.3185/com.sun.glass.ui.gtk.GtkApplication._runLoop(Native Method)
at org.jabref.merged.module@6.0.3185/com.sun.glass.ui.gtk.GtkApplication.lambda$runLoop$11(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source
@HoussemNasri
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Seems to be the same issue as #9475

Siedlerchr added a commit that referenced this issue Dec 28, 2022
@Siedlerchr
Fix journal abbbrev checker for curly braces
2628b59 
Escape any curly braces
Also use latex free fields


Fixes #9475
Fixes #9503
This was referenced Dec 28, 2022
Merged
Closed
@koppor koppor added this to the v6.0 milestone Jan 2, 2023
@koppor koppor changed the title Selectind an entry InProceedings causes an uncaught exception Selecting an entry InProceedings causes an uncaught exception Jan 2, 2023
@koppor koppor modified the milestones: v6.0, v5.9 Jan 2, 2023
Siedlerchr added a commit that referenced this issue Jan 2, 2023
@Siedlerchr @koppor @calixtus
Fix journal abbbrev checker for curly braces (#9504)
88c9f56 
* Fix journal abbbrev checker for curly braces

Escape any curly braces
Also use latex free fields


Fixes #9475
Fixes #9503

* refactor abbreviation checker to latex free entry checker

* adjust test cases

* checkstyle

* checkstyle

* Streamline tests and add tests for 9475 and 9503

Co-authored-by: Christoph <siedlerkiller@gmail.com>
Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>

* Rename Medline to Dotless and add translations for the menu actions

* On our way

Co-authored-by: Christoph <siedlerkiller@gmail.com>

* Add misisng test

Co-authored-by: Christoph <siedlerkiller@gmail.com>

* Try to use full MVMap in groovy script

* Fix path

* Streamline action

* Try to commit changes

* Revert "Streamline action"

This reverts commit 626e41a.

* Try to fix action

* Debug: show branch

* Stay on current branch

* Fix action

* Remove bad files

* Serizalizabe version 1

* Fix duplicate handling

* Add trigger on braches

* fix

* Fix wrong comment

* Some debug maybe?

* debug

* Add warning

* Try to use a single MV store only

* Fix import

* CamleCase to dash-case

* Fix brace

* Update journal abbrev list

* Remove debug output

* Internalize loading

* Disable workflow

* Update CHANGELOG.md

* Remove initialization hack

* Update journal abbrev list

* No need to fetch

* Use right WoS file

* Update journal abbrev list

* fix l10n and reorder

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>
Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>
Co-authored-by: koppor <koppor@users.noreply.github.com>
@mlep
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mlep commented Jan 5, 2023

I can confirm this issue is solved in JabRef 6.0--2023-01-04--1d7a7e3
Thanks!

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Fix journal abbbrev checker for curly braces JabRef/jabref
3 participants
@koppor @mlep @HoussemNasri