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vgteam#109 add rdfs:label to all concepts
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@JervenBolleman
JervenBolleman committed Feb 21, 2016
1 parent 0462173 commit 0e0bed3
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Showing 2 changed files with 142 additions and 2 deletions.
128 changes: 127 additions & 1 deletion ontology/vg.html
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Original file line number Diff line number Diff line change
Expand Up @@ -239,6 +239,15 @@ <h2>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"Node"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#subClassOf">
rdfs:subClassOf</a></td>
<td><a href="http://www.w3.org/2002/07/owl#Thing">
Expand All @@ -260,7 +269,16 @@ <h2>
<td><a href="http://www.w3.org/2000/01/rdf-schema#comment">
rdfs:comment</a></td>
<td>
"A Path is a collection of steps from path to path that represent an assembled sequence integrated into the variant grap."
"A Path is a collection of steps from path to path that represent an asserdfs:labelmbled sequence integrated into the variant grap."
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"Path"
<sup><a href=".">
xsd:string</a></sup>
</td>
Expand Down Expand Up @@ -293,6 +311,15 @@ <h2>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"Step"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#subClassOf">
rdfs:subClassOf</a></td>
<td><a href="http://www.w3.org/2002/07/owl#Thing">
Expand Down Expand Up @@ -334,6 +361,24 @@ <h3 id="ObjectProperties">Object properties</h3>
vg:Node</a></td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"++"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"linksForwardToForward"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#range">
rdfs:range</a></td>
<td><a href="http://biohackathon.org/resource/vg#Node">
Expand Down Expand Up @@ -367,6 +412,24 @@ <h3 id="ObjectProperties">Object properties</h3>
vg:Node</a></td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"+-"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"linksForwardToReverse"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#range">
rdfs:range</a></td>
<td><a href="http://biohackathon.org/resource/vg#Node">
Expand Down Expand Up @@ -400,6 +463,24 @@ <h3 id="ObjectProperties">Object properties</h3>
vg:Node</a></td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"-+"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"linksReverseToForward"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#range">
rdfs:range</a></td>
<td><a href="http://biohackathon.org/resource/vg#Node">
Expand Down Expand Up @@ -433,6 +514,24 @@ <h3 id="ObjectProperties">Object properties</h3>
vg:Node</a></td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"--"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"linksReverseToReverse"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#range">
rdfs:range</a></td>
<td><a href="http://biohackathon.org/resource/vg#Node">
Expand Down Expand Up @@ -466,6 +565,15 @@ <h3 id="ObjectProperties">Object properties</h3>
vg:Step</a></td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"node"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#range">
rdfs:range</a></td>
<td><a href="http://biohackathon.org/resource/vg#Step">
Expand Down Expand Up @@ -499,6 +607,15 @@ <h3 id="ObjectProperties">Object properties</h3>
vg:Step</a></td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"reverseOfNode"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#range">
rdfs:range</a></td>
<td><a href="http://biohackathon.org/resource/vg#Node">
Expand Down Expand Up @@ -533,6 +650,15 @@ <h3 id="DatatypeProperties">Datatype properties</h3>
vg:Step</a></td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#label">
rdfs:label</a></td>
<td>
"rank"
<sup><a href=".">
xsd:string</a></sup>
</td>
</tr>
<tr>
<td><a href="http://www.w3.org/2000/01/rdf-schema#range">
rdfs:range</a></td>
<td><a href="http://www.w3.org/2001/XMLSchema#positiveInteger">
Expand Down
16 changes: 15 additions & 1 deletion ontology/vg.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -18,57 +18,71 @@
:Node
rdf:type owl:Class ;
rdfs:comment "A node in the variant graph, representing a sequence section."^^xsd:string ;
rdfs:label "Node"^^xsd:string ;
rdfs:subClassOf owl:Thing ;
.
:Path
rdf:type owl:Class ;
rdfs:comment "A Path is a collection of steps from path to path that represent an assembled sequence integrated into the variant grap."^^xsd:string ;
rdfs:comment "A Path is a collection of steps from path to path that represent an asserdfs:labelmbled sequence integrated into the variant grap."^^xsd:string ;
rdfs:label "Path"^^xsd:string ;
rdfs:subClassOf owl:Thing ;
.
:Step
rdf:type owl:Class ;
rdfs:comment "A step along a path in the variant graph. A series of steps along a path represent an assembled sequence that was originally inserted into the the variant graph. A step points to a :Node or the reverse complement of a node and has a rank (step number)."^^xsd:string ;
rdfs:label "Step"^^xsd:string ;
rdfs:subClassOf owl:Thing ;
.
:linksForwardToForward
rdf:type owl:ObjectProperty ;
rdfs:comment "This links a node from the forward (5' to 3') strand on the subject node to the forward (5' to 3') strand on the predicate node."^^xsd:string ;
rdfs:domain :Node ;
rdfs:label "++"^^xsd:string ;
rdfs:label "linksForwardToForward"^^xsd:string ;
rdfs:range :Node ;
.
:linksForwardToReverse
rdf:type owl:ObjectProperty ;
rdfs:comment "This links a node from the forward (5' to 3') strand on the subject node to the reverse (3' to 5') strand on the predicate node."^^xsd:string ;
rdfs:domain :Node ;
rdfs:label "+-"^^xsd:string ;
rdfs:label "linksForwardToReverse"^^xsd:string ;
rdfs:range :Node ;
.
:linksReverseToForward
rdf:type owl:ObjectProperty ;
rdfs:comment "This links a node from the reverse (3' to 5') strand on the subject node to the forward (5' to 3') strand on the predicate node."^^xsd:string ;
rdfs:domain :Node ;
rdfs:label "-+"^^xsd:string ;
rdfs:label "linksReverseToForward"^^xsd:string ;
rdfs:range :Node ;
.
:linksReverseToReverse
rdf:type owl:ObjectProperty ;
rdfs:comment "This links a node from the reverse (3' to 5') strand on the subject node to the reverse (3' to 5') strand on the predicate node."^^xsd:string ;
rdfs:domain :Node ;
rdfs:label "--"^^xsd:string ;
rdfs:label "linksReverseToReverse"^^xsd:string ;
rdfs:range :Node ;
.
:node
rdf:type owl:ObjectProperty ;
rdfs:comment "This means that this step occurs on the forward strand of the sequence attaced to the node (i.e. it is on the explicit encoded forward (5' to 3') strand) of the predicate node."^^xsd:string ;
rdfs:domain :Step ;
rdfs:label "node"^^xsd:string ;
rdfs:range :Step ;
.
:rank
rdf:type owl:DatatypeProperty ;
rdfs:comment "The rank records the step place along its path."^^xsd:string ;
rdfs:domain :Step ;
rdfs:label "rank"^^xsd:string ;
rdfs:range xsd:positiveInteger ;
.
:reverseOfNode
rdf:type owl:ObjectProperty ;
rdfs:comment "This means this step occurs on the revese complement of the sequence attaced to the node (i.e. it is on the implicit reverse (3' to 5') strand) of the predicate node."^^xsd:string ;
rdfs:domain :Step ;
rdfs:label "reverseOfNode"^^xsd:string ;
rdfs:range :Node ;
.

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