fix grib build (NOAA-EMC#7)

* non interactive ww3_from_ftp.sh  NOAA-EMC#603

* uniformize regtests output by setting a global output type in the matrix script (NOAA-EMC#605)

* ww3_doxy_tmpl.md: clarify MODULE markup (NOAA-EMC#606)

* namelist feature for program ww3_bound (NOAA-EMC#610)

* doxygen: remove existing doxygen errors prior to markup (NOAA-EMC#611)

* update to not force grib build

* fix typo

Co-authored-by: Mickael Accensi <49198861+mickaelaccensi@users.noreply.github.com>
Co-authored-by: Matthew Masarik <86749872+MatthewMasarik-NOAA@users.noreply.github.com>

regtests/bin/run_cmake_test

@@ -403,10 +403,19 @@ then
   path_build=$path_w/build_SHRD
   mkdir -p $path_build
   cd $path_build
-  cat $file_c | sed 's/DIST/SHRD/' | sed 's/MPI //'   | \
-                sed 's/OMPG //'    | \
-                sed 's/OMPH //'    | sed 's/PDLIB //' | \
-                sed 's/B4B //' > $path_build/switch
+  if [[ "$outopt" = "all" ]] || [[ "$outopt" = "grib" ]] ; 
+  then 
+    cat $file_c | sed 's/DIST/SHRD/' | sed 's/MPI //'   | \
+                  sed 's/OMPG //'    | sed 's/NOGRB/NCEP2/' \
+                  sed 's/OMPH //'    | sed 's/PDLIB //' | \
+                  sed 's/B4B //' > $path_build/switch
+  else 
+    cat $file_c | sed 's/DIST/SHRD/' | sed 's/MPI //'   | \
+                  sed 's/OMPG //'    | \
+                  sed 's/OMPH //'    | sed 's/PDLIB //' | \
+                  sed 's/B4B //' > $path_build/switch
+  fi
+
   echo "Switch file is $path_build/switch with switches:" >> $ofile 
   cat $path_build/switch >> $ofile
   cmake $path_cmake -DSWITCH=$path_build/switch -DCMAKE_INSTALL_PREFIX=install > $ofile 2>&1  
@@ -469,7 +478,12 @@ else
   path_build=$path_w/build
   mkdir -p $path_build
   cd $path_build
-  \cp -f $file_c $path_build/switch
+  if [[ "$outopt" = "all" ]] || [[ "$outopt" = "grib" ]] ; 
+  then
+    cat $file_c | sed 's/NOGRB/NCEP2/' > $path_build/switch 
+  else 
+    \cp -f $file_c $path_build/switch
+  fi
   echo "Switch file is $path_build/switch with switches:" >> $ofile
   cat $path_build/switch >> $ofile
   cmake $path_cmake -DSWITCH=$path_build/switch -DCMAKE_INSTALL_PREFIX=install > $ofile 2>&1 

regtests/ww3_tp2.17/input/switch_NO_PDLIB

@@ -1 +1 @@
-NCEP2 TRKNC DIST MPI SCRIP MLIM PR3 UQ FLX0 LN1 ST4 STAB0 NL1 BT4 DB1 TR0 BS0 IS0 IC0 REF0 WNT2 WNX1 RWND CRT1 CRX1 O0 O1 O2 O2a O2b O2c O3 O4 O5 O6 O7
+NOGRB TRKNC DIST MPI SCRIP MLIM PR3 UQ FLX0 LN1 ST4 STAB0 NL1 BT4 DB1 TR0 BS0 IS0 IC0 REF0 WNT2 WNX1 RWND CRT1 CRX1 O0 O1 O2 O2a O2b O2c O3 O4 O5 O6 O7

regtests/ww3_tp2.17/input/switch_PDLIB

@@ -1 +1 @@
-NCEP2 TRKNC DIST MPI SCRIP MLIM PR3 UQ FLX0 PDLIB LN1 ST4 STAB0 NL1 BT4 DB1 TR0 BS0 IS0 IC0 REF0 WNT2 WNX1 RWND CRT1 CRX1 O0 O1 O2 O2a O2b O2c O3 O4 O5 O6 O7
+NOGRB TRKNC DIST MPI SCRIP MLIM PR3 UQ FLX0 PDLIB LN1 ST4 STAB0 NL1 BT4 DB1 TR0 BS0 IS0 IC0 REF0 WNT2 WNX1 RWND CRT1 CRX1 O0 O1 O2 O2a O2b O2c O3 O4 O5 O6 O7

regtests/ww3_ufs1.1/input/switch_MPI

@@ -1 +1 @@
-NCO NCEP2 DIST MPI SCRIP SCRIPNC WRST PR3 UQ FLX0 SEED ST4 STAB0 NL1 BT1 DB1 MLIM FLD2 TR0 BS0 RWND WNX1 WNT1 CRX1 CRT1 O0 O1 O2 O3 O4 O5 O6 O7 O14 O15 IC0 IS0 REF0
+NCO NOGRB DIST MPI SCRIP SCRIPNC WRST PR3 UQ FLX0 SEED ST4 STAB0 NL1 BT1 DB1 MLIM FLD2 TR0 BS0 RWND WNX1 WNT1 CRX1 CRT1 O0 O1 O2 O3 O4 O5 O6 O7 O14 O15 IC0 IS0 REF0

regtests/ww3_ufs1.1/input/switch_MPI_OMPH

@@ -1 +1 @@
-NCO NCEP2 DIST MPI OMPG OMGH SCRIP SCRIPNC WRST PR3 UQ FLX0 SEED ST4 STAB0 NL1 BT1 DB1 MLIM FLD2 TR0 BS0 RWND WNX1 WNT1 CRX1 CRT1 O0 O1 O2 O3 O4 O5 O6 O7 O14 O15 IC0 IS0 REF0
+NCO NOGRB DIST MPI OMPG OMGH SCRIP SCRIPNC WRST PR3 UQ FLX0 SEED ST4 STAB0 NL1 BT1 DB1 MLIM FLD2 TR0 BS0 RWND WNX1 WNT1 CRX1 CRT1 O0 O1 O2 O3 O4 O5 O6 O7 O14 O15 IC0 IS0 REF0

regtests/ww3_ufs1.2/input/switch_MPI_OMPH

@@ -1 +1 @@
-NCO NCEP2 DIST MPI OMPG OMGH SCRIP SCRIPNC WRST PR3 UQ FLX0 SEED ST4 STAB0 NL1 BT1 DB1 MLIM FLD2 TR0 BS0 RWND WNX1 WNT1 CRX1 CRT1 O0 O1 O2 O3 O4 O5 O6 O7 O14 O15 IC0 IS0 REF0
+NCO NOGRB DIST MPI OMPG OMGH SCRIP SCRIPNC WRST PR3 UQ FLX0 SEED ST4 STAB0 NL1 BT1 DB1 MLIM FLD2 TR0 BS0 RWND WNX1 WNT1 CRX1 CRT1 O0 O1 O2 O3 O4 O5 O6 O7 O14 O15 IC0 IS0 REF0

regtests/ww3_ufs1.3/input/switch_MPI_OMPH

@@ -1 +1 @@
-NCO NCEP2 DIST MPI OMPG OMGH SCRIP SCRIPNC WRST PR3 UQ FLX0 SEED ST4 STAB0 NL1 BT1 DB1 MLIM FLD2 TR0 BS0 RWND WNX1 WNT1 CRX1 CRT1 O0 O1 O2 O3 O4 O5 O6 O7 O14 O15 IC0 IS0 REF0
+NCO NOGRB DIST MPI OMPG OMGH SCRIP SCRIPNC WRST PR3 UQ FLX0 SEED ST4 STAB0 NL1 BT1 DB1 MLIM FLD2 TR0 BS0 RWND WNX1 WNT1 CRX1 CRT1 O0 O1 O2 O3 O4 O5 O6 O7 O14 O15 IC0 IS0 REF0