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@JinmiaoChenLab

Jinmiao Chen's Lab

single cell and AI for precision immunology

Popular repositories Loading

  1. GraphST GraphST Public

    Python 91 14

  2. Batch-effect-removal-benchmarking Batch-effect-removal-benchmarking Public

    A benchmark of batch-effect correction methods for single-cell RNA sequencing data

    Jupyter Notebook 71 46

  3. cytofkit cytofkit Public

    cytofkit: an integrated flow/mass cytometry data analysis pipeline

    R 57 27

  4. Rphenograph Rphenograph Public

    Rphenograph: R implementation of the PhenoGraph algorithm

    R 47 26

  5. SEDR SEDR Public

    Python 46 10

  6. SpatialGlue SpatialGlue Public

    SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.

    Python 42 5

Repositories

Showing 10 of 35 repositories
  • DISCOtoolkit_py Public

    Python version of DISCO toolkit

    JinmiaoChenLab/DISCOtoolkit_py’s past year of commit activity
    Python 12 1 2 0 Updated Nov 21, 2024
  • SEDR Public
    JinmiaoChenLab/SEDR’s past year of commit activity
    Python 46 MIT 10 5 0 Updated Nov 6, 2024
  • FastIntegration Public

    FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis

    JinmiaoChenLab/FastIntegration’s past year of commit activity
    R 23 4 2 0 Updated Oct 25, 2024
  • JinmiaoChenLab/DISCOtoolkit’s past year of commit activity
    R 24 3 0 0 Updated Oct 24, 2024
  • JinmiaoChenLab/SpaMosaic’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Oct 9, 2024
  • SpatialGlue Public

    SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.

    JinmiaoChenLab/SpatialGlue’s past year of commit activity
    Python 42 AGPL-3.0 5 14 0 Updated Jun 24, 2024
  • SpatialGlue_tutorials Public

    The tutorial is to show how to apply SpatialGlue to integrate spatial multi-omics data to decipher tissue heterogeneity.

    JinmiaoChenLab/SpatialGlue_tutorials’s past year of commit activity
    Python 1 0 0 0 Updated Jun 22, 2024
  • SpatialGlue_3M Public

    Extended version of SpatialGlue for integration of spatial triplet modality data.

    JinmiaoChenLab/SpatialGlue_3M’s past year of commit activity
    Python 4 0 0 0 Updated Jun 22, 2024
  • JinmiaoChenLab/NNI_brain_code’s past year of commit activity
    R 0 0 0 0 Updated May 3, 2024
  • scTM Public

    scTM: A package for topic modelling in transcriptomics data

    JinmiaoChenLab/scTM’s past year of commit activity
    Python 7 0 9 0 Updated May 1, 2024

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