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make permutedims more flexible #3004

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9 changes: 9 additions & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
@@ -1,3 +1,12 @@
# DataFrames.jl v1.4 Release Notes

## New functionalities

* `permutedims` now supports a `strict` keyword argument that allows
for a more flexible handling of values stored in a column that will
become a new header
([#3004](https://github.com/JuliaData/DataFrames.jl/issues/3004))

# DataFrames.jl v1.3.2 Patch Release Notes

## Bug fixes
Expand Down
41 changes: 32 additions & 9 deletions src/abstractdataframe/reshape.jl
Original file line number Diff line number Diff line change
Expand Up @@ -572,7 +572,7 @@ Base.transpose(::AbstractDataFrame, args...; kwargs...) =
"""
permutedims(df::AbstractDataFrame, src_namescol::Union{Int, Symbol, AbstractString},
[dest_namescol::Union{Symbol, AbstractString}];
makeunique::Bool=false)
makeunique::Bool=false, strict::Bool=true)

Turn `df` on its side such that rows become columns
and values in the column indexed by `src_namescol` become the names of new columns.
Expand All @@ -582,12 +582,16 @@ with name specified by `dest_namescol`.
# Arguments
- `df` : the `AbstractDataFrame`
- `src_namescol` : the column that will become the new header.
This column's element type must be `AbstractString` or `Symbol`.
- `dest_namescol` : the name of the first column in the returned `DataFrame`.
Defaults to the same name as `src_namescol`.
- `makeunique` : if `false` (the default), an error will be raised
if duplicate names are found; if `true`, duplicate names will be suffixed
with `_i` (`i` starting at 1 for the first duplicate).
- `strict` : if `true` (the default), an error will be raised if the values
contained in the `src_namescol` are not all `Symbol` or all `AbstractString`,
or can all be converted to `AbstractString` using `convert`. If `false`
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then any values are accepted and the will be changed to strings using
the `string` function.
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Suggested change
the `string` function.
the [`string`](@ref) function.

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@nalimilan would such reference to Base Julia work?

CC @mortenpi

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(I have accidentally committed this suggestion, but the question remains)

Thank you!

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OK - no need to answer - CI gave me the answer. I revert the change.

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Ah yes sorry that doesn't work indeed. So my net contribution to this PR is clearly negative...

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your 1 PR approval is worth 1000 LOC of contribution 😄


Note: The element types of columns in resulting `DataFrame`
(other than the first column, which always has element type `String`)
Expand Down Expand Up @@ -637,34 +641,53 @@ julia> permutedims(df2, 1, "different_name")
"""
function Base.permutedims(df::AbstractDataFrame, src_namescol::ColumnIndex,
dest_namescol::Union{Symbol, AbstractString};
makeunique::Bool=false)
makeunique::Bool=false, strict::Bool=true)

if src_namescol isa Integer
1 <= src_namescol <= ncol(df) || throw(BoundsError(index(df), src_namescol))
end
eltype(df[!, src_namescol]) <: SymbolOrString ||
throw(ArgumentError("src_namescol must have eltype `Symbol` or `<:AbstractString`"))
src_col_names = df[!, src_namescol]
local new_col_names
if eltype(src_col_names) <: SymbolOrString
new_col_names = src_col_names
elseif all(x -> x isa Symbol, src_col_names)
new_col_names = collect(Symbol, src_col_names)
elseif !strict
new_col_names = string.(src_col_names)
else
try
new_col_names = collect(String, src_col_names)
catch e
if e isa MethodError && e.f === convert
throw(ArgumentError("all elements of src_namescol must support " *
"conversion to AbstractString"))
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else
rethrow(e)
end
end
end

df_notsrc = df[!, Not(src_namescol)]
df_permuted = DataFrame(dest_namescol => names(df_notsrc))

if ncol(df_notsrc) == 0
df_tmp = DataFrame(AbstractVector[[] for _ in 1:nrow(df)], df[!, src_namescol],
df_tmp = DataFrame(AbstractVector[[] for _ in 1:nrow(df)], new_col_names,
makeunique=makeunique, copycols=false)
else
m = permutedims(Matrix(df_notsrc))
df_tmp = rename!(DataFrame(Tables.table(m)), df[!, src_namescol], makeunique=makeunique)
df_tmp = rename!(DataFrame(Tables.table(m)), new_col_names, makeunique=makeunique)
end
return hcat!(df_permuted, df_tmp, makeunique=makeunique, copycols=false)
end

function Base.permutedims(df::AbstractDataFrame, src_namescol::ColumnIndex;
makeunique::Bool=false)
makeunique::Bool=false, strict::Bool=true)
if src_namescol isa Integer
1 <= src_namescol <= ncol(df) || throw(BoundsError(index(df), src_namescol))
dest_namescol = _names(df)[src_namescol]
else
dest_namescol = src_namescol
end
return permutedims(df, src_namescol, dest_namescol; makeunique=makeunique)
return permutedims(df, src_namescol, dest_namescol;
makeunique=makeunique, strict=strict)
end
27 changes: 25 additions & 2 deletions test/reshape.jl
Original file line number Diff line number Diff line change
Expand Up @@ -637,14 +637,37 @@ end
@test permutedims(df4[!, [:e]], 1) == DataFrame(e=String[], x=[], y=[])
# Can't index float Column
@test_throws ArgumentError permutedims(df4[!, [:a, :b, :c]], 1)
@test_throws ArgumentError permutedims(DataFrame(a=Float64[], b=Float64[]), 1)
# but can if it is empty
@test permutedims(DataFrame(a=Float64[], b=Float64[]), 1) == DataFrame(a="b")
# Can't index columns that allow for missing
@test_throws ArgumentError permutedims(df4[!, [:g, :a, :b, :c]], 1)
@test_throws ArgumentError permutedims(df4[!, [:h, :a, :b]], 1)
# but can if they do not contain missing
@test permutedims(df4[!, [:h, :a, :b]], 1) == permutedims(df4[!, [:e, :a, :b]], 1, :h)
# Can't permute empty `df` ...
@test_throws BoundsError permutedims(DataFrame(), 1)
# ... but can permute zero-row df
@test permutedims(DataFrame(a=String[], b=Float64[]), 1) == DataFrame(a=["b"])

# tests of strict handling
df = DataFrame(a=["x", "y"], b=[1.0, 2.0], c=[3, 4], d=[true, false])
ref = permutedims(df, 1)
# allowed as contents is strings
df.a = collect(Any, df.a)
@test permutedims(df, 1) == ref
# this is allowed as conversion from categorical to string is allowed
df.a = categorical(df.a)
@test permutedims(df, 1) == ref
# allowed as contents is symbols
df.a = Any[:x, :y]
@test permutedims(df, 1) == ref
# not allowed mixing of strings and symbols
df.a = Any[:x, "y"]
@test_throws ArgumentError permutedims(df, 1)
# not allowed values that cannot be converted to string
df.a = Any['x', 'y']
@test_throws ArgumentError permutedims(df, 1)
# but allowed with strict=false
@test permutedims(df, 1, strict=false) == ref
end

@testset "stack view=true additional tests" begin
Expand Down