unable to do `PkgDev.publish()` #48

alsam · 2016-06-19T22:54:56Z

Hello, I've got the following error message when I tried to do Pkg.publish():

julia> PkgDev.publish()
INFO: Validating METADATA
INFO: Pushing OffsetArrays permanent tags: v0.2.0
ERROR: MethodError: no method matching Base.LibGit2.UserPasswordCredentials(::Void, ::String)
Closest candidates are:
  Base.LibGit2.UserPasswordCredentials(::AbstractString, ::AbstractString)
  Base.LibGit2.UserPasswordCredentials{T}(::Any)
 in credentials() at .../.julia/v0.5/PkgDev/src/github.jl:126
 in (::PkgDev.Entry.##6#9{Dict{String,Array{String,1}}})(::Base.LibGit2.GitRepo) at .../.julia/v0.5/PkgDev/src/entry.jl:99
 in with(::PkgDev.Entry.##6#9{Dict{String,Array{String,1}}}, ::Base.LibGit2.GitRepo) at ./libgit2/types.jl:660
 in publish(::String, ::String) at .../.julia/v0.5/PkgDev/src/entry.jl:84
 in publish() at .../.julia/v0.5/PkgDev/src/PkgDev.jl:55
 in eval(::Module, ::Any) at ./boot.jl:231
 in macro expansion at ./REPL.jl:92 [inlined]
 in (::Base.REPL.##1#2{Base.REPL.REPLBackend})() at ./event.jl:46

julia
               _
   _       _ _(_)_     |  A fresh approach to technical computing
  (_)     | (_) (_)    |  Documentation: http://docs.julialang.org
   _ _   _| |_  __ _   |  Type "?help" for help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 0.5.0-dev+4819 (2016-06-16 20:13 UTC)
 _/ |\__'_|_|_|\__'_|  |  Commit d634100* (3 days old master)
|__/                   |  x86_64-linux-gnu

Thanks!

The text was updated successfully, but these errors were encountered:

timholy · 2016-07-26T16:59:03Z

Still relevant with a version of master as of today:

julia> PkgDev.publish()
WARNING: bytestring(s::AbstractString...) is deprecated, use string(s...) instead.
 in depwarn(::String, ::Symbol) at ./deprecated.jl:64
 in bytestring(::SubString{String}) at ./deprecated.jl:50
 in dir(::SubString{String}) at /home/tim/.julia/v0.5/PkgDev/src/PkgDev.jl:24
 in (::PkgDev.Entry.##4#9{String,Dict{String,Array{String,1}},String})(::Base.LibGit2.GitRepo) at /home/tim/.julia/v0.5/PkgDev/src/entry.jl:71
 in with(::PkgDev.Entry.##4#9{String,Dict{String,Array{String,1}},String}, ::Base.LibGit2.GitRepo) at ./libgit2/types.jl:658
 in publish(::String, ::String) at /home/tim/.julia/v0.5/PkgDev/src/entry.jl:53
 in publish() at /home/tim/.julia/v0.5/PkgDev/src/PkgDev.jl:70
 in eval(::Module, ::Any) at ./boot.jl:234
 in macro expansion at ./REPL.jl:92 [inlined]
 in (::Base.REPL.##3#4{Base.REPL.REPLBackend})() at ./event.jl:46
while loading no file, in expression starting on line 0
INFO: Validating METADATA
WARNING: bytestring(s::AbstractString...) is deprecated, use string(s...) instead.
 in depwarn(::String, ::Symbol) at ./deprecated.jl:64
 in bytestring(::String) at ./deprecated.jl:50
 in dir(::String) at /home/tim/.julia/v0.5/PkgDev/src/PkgDev.jl:24
 in publish(::String, ::String) at /home/tim/.julia/v0.5/PkgDev/src/entry.jl:86
 in publish() at /home/tim/.julia/v0.5/PkgDev/src/PkgDev.jl:70
 in eval(::Module, ::Any) at ./boot.jl:234
 in macro expansion at ./REPL.jl:92 [inlined]
 in (::Base.REPL.##3#4{Base.REPL.REPLBackend})() at ./event.jl:46
while loading no file, in expression starting on line 0
INFO: Pushing ImageMagick permanent tags: v0.1.7
ERROR: error authenticating:  ssh-agent
ERROR: MethodError: no method matching start(::Void)
Closest candidates are:
  start(::SimpleVector)
  start(::Base.MethodList)
  start(::IntSet)
  ...
 in isempty(::Void) at ./iterator.jl:3
 in credentials_callback(::Ptr{Ptr{Void}}, ::Cstring, ::Cstring, ::UInt32, ::Ptr{Void}) at ./libgit2/callbacks.jl:117
 in macro expansion at ./libgit2/error.jl:96 [inlined]
 in #push#53(::Bool, ::Base.LibGit2.PushOptions, ::Function, ::Base.LibGit2.GitRemote, ::Array{String,1}) at ./libgit2/remote.jl:84
 in (::Base.LibGit2.#kw##push)(::Array{Any,1}, ::Base.LibGit2.#push, ::Base.LibGit2.GitRemote, ::Array{String,1}) at ./<missing>:0
 in #push#92(::String, ::String, ::Array{String,1}, ::Bool, ::Nullable{Base.LibGit2.UserPasswordCredentials}, ::Function, ::Base.LibGit2.GitRepo) at ./libgit2/libgit2.jl:179
 in (::Base.LibGit2.#kw##push)(::Array{Any,1}, ::Base.LibGit2.#push, ::Base.LibGit2.GitRepo) at ./<missing>:0
 in (::PkgDev.Entry.##6#11{Dict{String,Array{String,1}}})(::Base.LibGit2.GitRepo) at /home/tim/.julia/v0.5/PkgDev/src/entry.jl:101
 in with(::PkgDev.Entry.##6#11{Dict{String,Array{String,1}}}, ::Base.LibGit2.GitRepo) at ./libgit2/types.jl:658
 in publish(::String, ::String) at /home/tim/.julia/v0.5/PkgDev/src/entry.jl:86
 in publish() at /home/tim/.julia/v0.5/PkgDev/src/PkgDev.jl:70
 in eval(::Module, ::Any) at ./boot.jl:234
 in macro expansion at ./REPL.jl:92 [inlined]
 in (::Base.REPL.##3#4{Base.REPL.REPLBackend})() at ./event.jl:46

julia> versioninfo()
Julia Version 0.5.0-pre+5632
Commit c849f54* (2016-07-22 19:29 UTC)
Platform Info:
  System: Linux (x86_64-linux-gnu)
  CPU: Intel(R) Core(TM) i7-5500U CPU @ 2.40GHz
  WORD_SIZE: 64
  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Haswell)
  LAPACK: libopenblas64_
  LIBM: libopenlibm
  LLVM: libLLVM-3.7.1 (ORCJIT, broadwell)

PkgDev:

tim@diva:~/.julia/v0.5/PkgDev$ git log | head
commit e16710de8dbabbf3a327b09687e5912c56157e93
Author: Gabriel Gellner <gabrielgellner@gmail.com>
Date:   Wed Jun 29 11:06:51 2016 -0700

    Add GPL family of Licenses (#47)

    * Add GPL family of Licenses

    Pull request to resolve #46

tkelman · 2016-07-26T17:02:03Z

I think you're 2 commits of julia prior to the fix for that one https://github.com/JuliaLang/julia/commits/3503a59666b4cca443e926c8c5974a1817f1180e

timholy · 2016-07-26T17:40:02Z

Ah, OK. Moreover, it worked if I had ssh-agent already running.

I'll update my julia.

wildart · 2016-07-28T18:43:00Z

@alsam Try PkgDev.config()

wildart · 2016-07-28T18:44:48Z

@timholy Update your julia build to recent master, reported error was fixed.

timholy · 2016-07-28T19:02:14Z

Yep, I'm just loving Pkg & PkgDev these days. The progress in recent weeks has been astonishing.

alsam · 2016-07-28T20:12:44Z

Even with PkgDev.config() I'm still having:

julia> PkgDev.publish()
INFO: Validating METADATA
INFO: Pushing OffsetArrays permanent tags: v0.2.0, v0.2.1
ERROR: error authenticating:  ssh-agent
ERROR: AssertionError: isdefined(p,ks)
 in setindex!(::Base.LibGit2.UserPasswordCredentials, ::String, ::Symbol, ::String) at ./libgit2/types.jl:67
...

@timholy mentioned that it works if ssh-agent is running.
Cannot figure how to get it running.

tkelman · 2016-07-28T20:34:56Z

@Keno it sure would have been nice if those assertions had been more descriptive about the values of what it was trying to look up. @alsam does that happen every time? you can try gallium or adding @show calls to see what's going wrong.

Keno · 2016-07-28T20:37:10Z

What about the rest of the backtrack?

alsam · 2016-07-28T21:01:54Z

Yes, it happens every time, the full log:

INFO: Pushing OffsetArrays permanent tags: v0.2.0, v0.2.1
ERROR: error authenticating:  ssh-agent
ERROR: AssertionError: isdefined(p,ks)
 in setindex!(::Base.LibGit2.UserPasswordCredentials, ::String, ::Symbol, ::String) at ./libgit2/types.jl:67
 in credentials_callback(::Ptr{Ptr{Void}}, ::Cstring, ::Cstring, ::UInt32, ::Ptr{Void}) at ./libgit2/callbacks.jl:134
 in macro expansion at ./libgit2/error.jl:96 [inlined]
 in #push#53(::Bool, ::Base.LibGit2.PushOptions, ::Function, ::Base.LibGit2.GitRemote, ::Array{String,1}) at ./libgit2/remote.jl:84
 in (::Base.LibGit2.#kw##push)(::Array{Any,1}, ::Base.LibGit2.#push, ::Base.LibGit2.GitRemote, ::Array{String,1}) at ./<missing>:0
 in #push#94(::String, ::String, ::Array{String,1}, ::Bool, ::Nullable{Base.LibGit2.UserPasswordCredentials}, ::Function, ::Base.LibGit2.GitRepo) at ./libgit2/libgit2.jl:179
 in (::Base.LibGit2.#kw##push)(::Array{Any,1}, ::Base.LibGit2.#push, ::Base.LibGit2.GitRepo) at ./<missing>:0
 in (::PkgDev.Entry.##6#11{Dict{String,Array{String,1}}})(::Base.LibGit2.GitRepo) at /home/.../.julia/v0.5/PkgDev/src/entry.jl:99
 in with(::PkgDev.Entry.##6#11{Dict{String,Array{String,1}}}, ::Base.LibGit2.GitRepo) at ./libgit2/types.jl:658
 in publish(::String, ::String) at /home/.../.julia/v0.5/PkgDev/src/entry.jl:84
 in publish() at /home/.../.julia/v0.5/PkgDev/src/PkgDev.jl:55

julia> versioninfo()
Julia Version 0.5.0-rc0+36
Commit b7d37c4 (2016-07-28 19:53 UTC)
Platform Info:
  System: Linux (x86_64-linux-gnu)
  CPU: Intel(R) Core(TM) i5-3470 CPU @ 3.20GHz
  WORD_SIZE: 64
  BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Sandybridge)
  LAPACK: libopenblas64_
  LIBM: libopenlibm
  LLVM: libLLVM-3.7.1 (ORCJIT, ivybridge)

alsam · 2016-07-28T23:28:20Z

The same error message after upgrading PkgDev

julia> Pkg.update()
INFO: Updating METADATA...
WARNING: Cannot perform fast-forward merge.
INFO: Updating cache of PkgDev...
INFO: Updating cache of PositiveFactorizations...
INFO: Updating OffsetArrays master...
WARNING: Package PkgDev.try: skipping update (dirty)...
INFO: Computing changes...
INFO: Upgrading PkgDev: v0.1.0 => v0.1.1
...

julia> PkgDev.publish()
INFO: Validating METADATA
INFO: Pushing OffsetArrays permanent tags: v0.2.0, v0.2.1
ERROR: error authenticating:  ssh-agent
ERROR: AssertionError: isdefined(p,ks)
 in setindex!(::Base.LibGit2.UserPasswordCredentials, ::String, ::Symbol, ::String) at ./libgit2/types.jl:67
...

Keno · 2016-07-28T23:28:43Z

I have a patch, hold on.

alsam · 2016-07-28T23:28:59Z

Thanks!

Keno · 2016-07-29T01:03:47Z

Try with JuliaLang/julia#17691. I suspect there may still be a bug in PkgDev (namely trying to authenticate an SSH remote with username/password), but at least it should give a better error message.

alsam · 2016-07-29T13:51:34Z

Ok, switched to kf/refactorlibgit2 branch and now have the following error message:

julia> PkgDev.publish()
INFO: Validating METADATA
INFO: Pushing OffsetArrays permanent tags: v0.2.0, v0.2.1
WARNING: The explicitly provided credentials were incompatible with the server's supported authentication methods
ERROR: GitError(Code:EAUTH, Class:None, No errors)
 in macro expansion at ./libgit2/error.jl:98 [inlined]
 in #push#53(::Bool, ::Base.LibGit2.PushOptions, ::Function, ::Base.LibGit2.GitRemote, ::Array{String,1}) at ./libgit2/remote.jl:84
 in (::Base.LibGit2.#kw##push)(::Array{Any,1}, ::Base.LibGit2.#push, ::Base.LibGit2.GitRemote, ::Array{String,1}) at ./<missing>:0
 in #push#94(::String, ::String, ::Array{String,1}, ::Bool, ::Nullable{Base.LibGit2.UserPasswordCredentials}, ::Function, ::Base.LibGit2.GitRepo) at ./libgit2/libgit2.jl:179
 in (::Base.LibGit2.#kw##push)(::Array{Any,1}, ::Base.LibGit2.#push, ::Base.LibGit2.GitRepo) at ./<missing>:0
 in (::PkgDev.Entry.##6#11{Dict{String,Array{String,1}}})(::Base.LibGit2.GitRepo) at /home/.../.julia/v0.5/PkgDev/src/entry.jl:101
 in with(::PkgDev.Entry.##6#11{Dict{String,Array{String,1}}}, ::Base.LibGit2.GitRepo) at ./libgit2/types.jl:645
 in publish(::String, ::String) at /home/.../.julia/v0.5/PkgDev/src/entry.jl:86
 in publish() at /home/.../.julia/v0.5/PkgDev/src/PkgDev.jl:70

Keno · 2016-07-29T15:50:50Z

Yep, for some reason your METADATA has an SSH remote but PkgDev expects it to be an HTTPS remote. Ideally PkgDev should probably force HTTPS.

alsam · 2016-07-30T00:18:59Z

Thanks @Keno, do you know how to fix METADATA?

alsam · 2016-08-02T08:53:19Z

Switched to main trunk

julia> versioninfo()
Julia Version 0.5.0-rc0+124
Commit 6b6dead (2016-08-02 06:09 UTC)
Platform Info:
  System: Linux (x86_64-linux-gnu)
...

Thanks for merging the more informative diagnostics to master from kf/refactorlibgit2:

julia> PkgDev.publish()
INFO: Validating METADATA
INFO: Pushing OffsetArrays permanent tags: v0.2.0, v0.2.1, v0.2.2
WARNING: The explicitly provided credentials were incompatible with the server's supported authentication methods
ERROR: GitError(Code:EAUTH, Class:None, No errors)
 in macro expansion at ./libgit2/error.jl:98 [inlined]
...

Unfortunately still don't know a workaround for pushing the tags.

randyzwitch · 2016-08-03T00:43:08Z

@alsam I had problems pushing tags, I ended up modifying the pushurl in <package>/.git/config to use https instead of git protocol and it worked.

A hack for sure, but it worked

tkelman · 2016-08-03T01:33:26Z

We should probably make Pkg default to using an https push url

alsam · 2016-08-03T04:23:32Z

Thanks for the hint, just have added to <package>/.git/config

[url "https://"]
    insteadOf = git://

As I have the same in $HOME/.gitconfig
unfortunately it didn't help.

alsam · 2016-08-03T04:31:35Z

Thanks @randyzwitch , @tkelman for the hints!
Directly modified pushurl in <package>/.git/config
and created a push request JuliaLang/METADATA.jl#5417

tomasaschan · 2016-08-10T10:46:06Z

I'm seing a similar error today, but I don't know if the problem is with PkgDev or base Julia:

julia> PkgDev.publish()
INFO: Validating METADATA
INFO: Pushing Contour permanent tags: v0.1.1
WARNING: The explicitly provided credentials were incompatible with the server's supported authentication methods
ERROR: GitError(Code:EAUTH, Class:None, No errors)
 in macro expansion at ./libgit2/error.jl:98 [inlined]
 in #push#53(::Bool, ::Base.LibGit2.PushOptions, ::Function, ::Base.LibGit2.GitRemote, ::Array{String,1}) at ./libgit2/remote.jl:84
 in (::Base.LibGit2.#kw##push)(::Array{Any,1}, ::Base.LibGit2.#push, ::Base.LibGit2.GitRemote, ::Array{String,1}) at ./<missing>:0
 in #push#94(::String, ::String, ::Array{String,1}, ::Bool, ::Nullable{Base.LibGit2.UserPasswordCredentials}, ::Function, ::Base.LibGit2.GitRepo) at ./libgit2/libgit2.jl:179
 in (::Base.LibGit2.#kw##push)(::Array{Any,1}, ::Base.LibGit2.#push, ::Base.LibGit2.GitRepo) at ./<missing>:0
 in (::PkgDev.Entry.##6#11{Dict{String,Array{String,1}}})(::Base.LibGit2.GitRepo) at /home/tlycken/.julia/v0.5/PkgDev/src/entry.jl:101
 in with(::PkgDev.Entry.##6#11{Dict{String,Array{String,1}}}, ::Base.LibGit2.GitRepo) at ./libgit2/types.jl:645
 in publish(::String, ::String) at /home/tlycken/.julia/v0.5/PkgDev/src/entry.jl:86
 in publish() at /home/tlycken/.julia/v0.5/PkgDev/src/PkgDev.jl:70

I get the same error regardless of Pkg.setprotocol!("git"), Pkg.setprotocol!("ssh"), or Pkg.setprotocol!("https"), PkgDev.config() indicates a user for which ~/.ssh/id_rsa is a valid key file, and ssh-agent is running. Julia Version 0.5.0-rc1+1, Commit acfd04c*, PkgDev v0.1.1.

Do I still need to fix some config issue, or should I file a new issue (here or at base Julia)?

helgee · 2016-08-15T13:53:03Z

Another one on RC2:

ERROR: GitError(Code:EAUTH, Class:OS, The ProgramData file 'config' doesn't exist: )
 in macro expansion at ./libgit2/error.jl:99 [inlined]
 in #push#53(::Bool, ::Base.LibGit2.PushOptions, ::Function, ::Base.LibGit2.GitRemote, ::Array{String,1}) at ./libgit2/remote.jl:84
 in (::Base.LibGit2.#kw##push)(::Array{Any,1}, ::Base.LibGit2.#push, ::Base.LibGit2.GitRemote, ::Array{String,1}) at ./<missing>:0
 in #push#94(::String, ::String, ::Array{String,1}, ::Bool, ::Nullable{Base.LibGit2.UserPasswordCredentials}, ::Function, ::Base.LibGit2.GitRepo) at ./libgit2/libgit2.jl:185
 in (::Base.LibGit2.#kw##push)(::Array{Any,1}, ::Base.LibGit2.#push, ::Base.LibGit2.GitRepo) at ./<missing>:0
 in (::PkgDev.Entry.##6#11{Dict{String,Array{String,1}}})(::Base.LibGit2.GitRepo) at /Users/helge/.julia/v0.5/PkgDev/src/entry.jl:114
 in with(::PkgDev.Entry.##6#11{Dict{String,Array{String,1}}}, ::Base.LibGit2.GitRepo) at ./libgit2/types.jl:638
 in publish(::String, ::String) at /Users/helge/.julia/v0.5/PkgDev/src/entry.jl:97
 in publish() at /Users/helge/.julia/v0.5/PkgDev/src/PkgDev.jl:70

eschnett · 2016-08-16T14:19:09Z

Is there a work-around for this EAUTH error?

wildart · 2016-08-16T16:32:46Z

@helgee Run PkgDev.config() to setup a GitHub access token for publishing.

@eschnett Have you tried latest master? All push updates now use https transport.

eschnett · 2016-08-16T17:54:06Z

@wildart I tried master for both Julia and PkgDev, and this didn't help. I also ran PkgDev.config(), and confirmed my user name etc., but this also didn't change anything.

How does the Github access token thingy work? Is this something I have to do manually for my clone of the Metadata repo? Is there a way I can use ssh instead?

alsam · 2016-08-17T12:27:59Z

PkgDev in the current state is broken for me too. Used to work work-around to substitute pushurl
from git@github.com/... to https://github.com/... doesn't work for me anymore unfortunately.
The error message:

julia> PkgDev.publish()
INFO: Validating METADATA
INFO: Pushing OffsetArrays permanent tags: v0.2.4
ERROR: GitError(Code:EAUTH, Class:None, No errors)
 in macro expansion at ./libgit2/error.jl:99 [inlined]
...

I'd retreat to manual creation of METADATA branch or maybe someone knows a workaround?

eschnett · 2016-08-17T13:33:59Z

My workaround is to tag and publish from Julia 0.4; that seems to be the easiest.

alsam · 2016-08-17T15:15:52Z

Thank you, it works.

tkelman · 2016-08-17T16:29:04Z

Or tag from PkgDev and push from the command-line, that's what I usually do.

leclere · 2016-10-19T16:10:16Z

I have the same error after PkgDev.publish():

WARNING: The explicitly provided credentials were incompatible with the server's supported authentication methods
ERROR: GitError(Code:EAUTH, Class:OS, The ProgramData file 'config' doesn't exist: )
in macro expansion at ./libgit2/error.jl:99 [inlined]
in #push#53(::Bool, ::Base.LibGit2.PushOptions, ::Function, ::Base.LibGit2.GitRemote, ::Array{String,1}) at ./libgit2/remote.jl:84

@tkelman would you mind precising how you push from command-line ?

P.S: I don't know how to insert block of code (or in this case error report), sorry for the bad presentation.

tkelman · 2016-10-19T16:24:20Z

What I do is roughly the following

Pkg.checkout("PackageToTag")
Pkg.update()
import PkgDev
cd(Pkg.dir("METADATA"))
run(`git checkout -b tagmynewpackage`)
PkgDev.tag("PackageToTag")
run(`git remote add mine https://tkelman@github.com/tkelman/METADATA.jl`)
run(`git push mine tagmynewpackage`) # or from shell mode with ;
cd(Pkg.dir("PackageToTag"))
run(`git remote add mine https://tkelman@github.com/tkelman/PackageToTag.jl`)
run(`git push mine --tags`) # or from shell mode with ;

then open the PR to METADATA

This was referenced Jun 20, 2016

New implementation based on julia-0.5 infrastructure JuliaArrays/OffsetArrays.jl#2

Merged

OffsetArrays.jl package does not work in 0.3.12 and 0.4.1 JuliaArrays/OffsetArrays.jl#1

Closed

tkelman mentioned this issue Aug 6, 2016

Regular update with minor improvements JuliaLang/METADATA.jl#5851

Merged

rsrock mentioned this issue Aug 11, 2016

PkgDev.publish hangs after entering Github user/pass #65

Closed

tomasaschan mentioned this issue Aug 18, 2016

GitError on PkgDev.publish() #69

Closed

tkelman mentioned this issue Aug 24, 2016

cache compile dep tracking JuliaLang/julia#18150

Merged

davidanthoff closed this as completed Nov 12, 2019

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unable to do `PkgDev.publish()` #48

unable to do `PkgDev.publish()` #48

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unable to do PkgDev.publish() #48

unable to do PkgDev.publish() #48

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unable to do `PkgDev.publish()` #48

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