Skip to content

Commit

Permalink
Merge branch 'master' of linux.gp.cs.cmu.edu:~ckingsf/git/squid
Browse files Browse the repository at this point in the history
  • Loading branch information
Congm12 committed Jul 20, 2017
2 parents 8788e3a + 16e857d commit 115447d
Showing 1 changed file with 6 additions and 3 deletions.
9 changes: 6 additions & 3 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -3,11 +3,14 @@ SQUID is designed to detect transcriptomic structural variations from RNA-seq al

To reproduce the result of applying SQUID on simulation data and previously studied cell lines, follow the instructions from [squidtest](https://github.com/Kingsford-Group/squidtest)

# RELEASE
# INSTALLING PRE-COMPILED BINARIES
If you want to skip the installation process, you can find the binary release [here](https://github.com/Kingsford-Group/squid/releases)!

# INSTALLATION
SQUID requires Boost, GLPK, BamTools. A step by step installation construction can be found [here for linux](doc/Installation_linux.md), and [here for mac](doc/Installation_mac.md).
# BUILDING FROM SOURCE

You only need to build from source if either the pre-built binaries (see above) don't work on your system or you want to make a change to the SQUID code.

Compiling SQUID requires Boost, GLPK, BamTools. A step by step installation construction can be found [here for linux](doc/Installation_linux.md), and [here for mac](doc/Installation_mac.md).

On Mac, you need to additionly run the following command to dynamicly linking dependent libraries:
```
Expand Down

0 comments on commit 115447d

Please sign in to comment.